RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA448207" and tax_phylum = "Negarnaviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Negarnaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA448207 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10642645 10642645 PRJNA448207_P_NODE_28109_length_248_cov_0.880000_g27946_i0 PRJNA448207 28109 248 0.88 2.1824 Varicosavirus alphabrassicae 3433102 Viruses Viruses 459 1.13e-124   NTclustered gi|2500669919|ref|NC_079119.1| 2793725 g27946 i0 100 1 248 0 100 0 1 248 875 628 Brassica rapa virus 1 N (QK880_s2gp1), protein 2 (QK880_s2gp2), and protein 3 (QK880_s2gp3) genes, complete cds blastn 248 459 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Rhabdoviridae Varicosavirus Varicosavirus alphabrassicae
26823031 26823031 PRJNA448207_P_NODE_23001_length_267_cov_1.206186_g22838_i0 PRJNA448207 23001 267 1.206186 3.22051662 Zebrafish influenza B-like virus RQ01 Viruses Viruses 97.1 3.7e-21   NR AVM87624.1 RQ01 g22838 i0 56.6 0.853932584269663 76 33 85.4 0 229 2 3 78 AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] diamond 228 97.1 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Zebrafish influenza B-like virus
28323922 28323922 PRJNA448207_P_NODE_7886_length_435_cov_1.121547_g7724_i0 PRJNA448207 7886 435 1.121547 4.87872945 Zebrafish influenza B-like virus RQ01 Viruses Viruses 239 1.15e-75   NR AXG64379.1 RQ01 g7724 i0 84 7.9448275862069 144 23 99.3 0 2 433 91 234 AXG64379.1 nucleoprotein, partial [Influenza B virus] diamond 3456 239 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Zebrafish influenza B-like virus
28465793 28465793 PRJNA448207_P_NODE_28146_length_248_cov_0.880000_g27983_i0 PRJNA448207 28146 248 0.88 2.1824 Zebrafish influenza B-like virus RQ01 Viruses Viruses 100 2.36e-22   NR AVM87624.1 RQ01 g27983 i0 61.3 0.967741935483871 80 31 96.8 0 240 1 97 176 AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] diamond 240 100 1 Viruses   Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Zebrafish influenza B-like virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;