RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA448207", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA448207 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
438858 438858 PRJNA448207_P_NODE_31321_length_243_cov_1.358824_g31158_i0 PRJNA448207 31321 243 1.358824 3.30194232 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 169 2.0799999999999997e-37   NTclustered gi|2795056455|ref|XM_067942329.1| 4785 g31158 i0 80.455 6.24691358024691 220 43 91 0 1 220 3139 3358 Phytophthora cinnamomi Splicing factor 3B subunit 1 (IUM83_17377), partial mRNA blastn 1518 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
13192400 13192400 PRJNA448207_P_NODE_31491_length_243_cov_0.905882_g31328_i0 PRJNA448207 31491 243 0.905882 2.20129326 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 172 1.6099999999999996e-38   NTclustered gi|2794926242|ref|XM_067883504.1| 164328 g31328 i0 80.617 4.18106995884774 227 40 93 4 3 227 880 1104 Phytophthora ramorum Developmentally-regulated GTP-binding protein 1 (KRP23_12862), partial mRNA blastn 1016 172 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
31308284 31308284 PRJNA448207_P_NODE_28595_length_247_cov_0.885057_g28432_i0 PRJNA448207 28595 247 0.885057 2.18609079 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 90.9 4.51e-19   NR TYZ60815.1 1485010 g28432 i0 48.8 4.90688259109312 82 42 99.6 0 247 2 166 247 TYZ60815.1 hypothetical protein PybrP1_012595 [[Pythium] brassicae (nom. inval.)] diamond 1212 90.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
32400413 32400413 PRJNA448207_P_NODE_29619_length_246_cov_0.890173_g29456_i0 PRJNA448207 29619 246 0.890173 2.18982558 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 167 5.65e-46   NR TMW57793.1 41045 g29456 i0 95.1 1.97560975609756 81 4 98.8 0 245 3 755 835 TMW57793.1 hypothetical protein Poli38472_014396 [Pythium oligandrum] diamond 486 168 0.994047619047619 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;