RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA448207", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA448207 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1713418 1713418 PRJNA448207_P_NODE_15242_length_326_cov_2.177866_g15079_i0 PRJNA448207 15242 326 2.177866 7.09984316 Paramecium tetraurelia 5888 SAR_Eukaryotes SAR_Eukaryotes 82.4 3.91e-11   NTclustered gi|2386233289|ref|XM_001434467.2| 5888 g15079 i0 82.653 0.788343558282209 98 12 29 5 222 317 126 32 Paramecium tetraurelia uncharacterized protein (GSPATT00036240001), partial mRNA blastn 257 82.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
6195387 6195387 PRJNA448207_P_NODE_29385_length_246_cov_0.890173_g29222_i0 PRJNA448207 29385 246 0.890173 2.18982558 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 449 6.74e-122   NTclustered gi|1802599797|gb|MT001206.1| 41631 g29222 i0 99.593 99.8252032520325 246 1 100 0 1 246 529 774 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 24557 449 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
15741149 15741149 PRJNA448207_P_NODE_13513_length_343_cov_1.222222_g13350_i0 PRJNA448207 13513 343 1.222222 4.19222146 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.032   NTclustered gi|471220273|ref|XM_004025160.1| 5932 g13350 i0 100 0.0816326530612245 28 0 8 0 267 294 263 236 Ichthyophthirius multifiliis ubiquitin- hect domain protein, putative (IMG5_189580) mRNA, complete cds blastn 28 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;