contig_metadata
16 rows where bioproject = "PRJNA448207" and tax_clade = "PVC group"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3643225 | 3643225 | PRJNA448207_P_NODE_17843_length_304_cov_1.333333_g17680_i0 | PRJNA448207 | 17843 | 304 | 1.333333 | 4.05333232 | Botrimarina | 2795782 | Bacteria | Bacteria | 521 | 1.8e-143 | NTclustered | gi|1712768844|gb|CP036350.1| | 2527962 | g17680 | i0 | 97.697 | 99.5032894736842 | 304 | 5 | 100 | 2 | 1 | 304 | 931274 | 931575 | Planctomycetes bacterium K2D chromosome, complete genome | blastn | 30249 | 521 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetes bacterium K2D | |||||
| 4265776 | 4265776 | PRJNA448207_P_NODE_26344_length_250_cov_0.870056_g26181_i0 | PRJNA448207 | 26344 | 250 | 0.870056 | 2.17514 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 285 | 2.05e-72 | NTclustered | gi|1927958621|gb|CP054186.1| | 2026777 | g26181 | i0 | 87.251 | 76.636 | 251 | 30 | 100 | 2 | 1 | 250 | 1868030 | 1868279 | MAG: Phycisphaeraceae bacterium isolate H1_PLA1 chromosome | blastn | 19159 | 285 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium | ||
| 13846020 | 13846020 | PRJNA448207_P_NODE_9851_length_394_cov_2.713396_g9689_i0 | PRJNA448207 | 9851 | 394 | 2.713396 | 10.69078024 | Botrimarina | 2795782 | Bacteria | Bacteria | 712 | 0 | NTclustered | gi|1712768844|gb|CP036350.1| | 2527962 | g9689 | i0 | 99.239 | 129.134517766497 | 394 | 3 | 100 | 0 | 1 | 394 | 4245220 | 4244827 | Planctomycetes bacterium K2D chromosome, complete genome | blastn | 50879 | 712 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetes bacterium K2D | |||||
| 15741576 | 15741576 | PRJNA448207_P_NODE_7233_length_452_cov_1.588391_g7071_i0 | PRJNA448207 | 7233 | 452 | 1.588391 | 7.17952732 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 459 | 2.2099999999999993e-124 | NTclustered | gi|2874253793|emb|OY969777.1| | 412056 | g7071 | i0 | 85.275 | 251.601769911504 | 455 | 55 | 99 | 12 | 5 | 452 | 2366129 | 2365680 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD01689.bin.c.1 genome assembly, chromosome: 1 | blastn | 113724 | 459 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 17015839 | 17015839 | PRJNA448207_P_NODE_13834_length_340_cov_0.951311_g13671_i0 | PRJNA448207 | 13834 | 340 | 0.951311 | 3.2344574 | uncultured Verrucomicrobiales bacterium | 100234 | Bacteria | Bacteria | 527 | 4.3799999999999985e-145 | NTclustered | gi|220682330|gb|FJ542937.1| | 100234 | g13671 | i0 | 95.195 | 95.95 | 333 | 16 | 98 | 0 | 8 | 340 | 67 | 399 | Uncultured Verrucomicrobiales bacterium clone B01-06A 16S ribosomal RNA gene, partial sequence | blastn | 32623 | 527 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | uncultured Verrucomicrobiales bacterium | |||
| 19564321 | 19564321 | PRJNA448207_P_NODE_12476_length_355_cov_1.092199_g12313_i0 | PRJNA448207 | 12476 | 355 | 1.092199 | 3.87730645 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 579 | 1.2499999999999997e-160 | NTclustered | gi|2076441902|gb|CP075368.1| | 2026777 | g12313 | i0 | 96.821 | 240.96338028169 | 346 | 11 | 97 | 0 | 10 | 355 | 2581946 | 2582291 | MAG: Phycisphaeraceae bacterium isolate ACE_PLA2 chromosome | blastn | 85542 | 579 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium | ||
| 21493927 | 21493927 | PRJNA448207_P_NODE_11937_length_361_cov_3.270833_g11775_i0 | PRJNA448207 | 11937 | 361 | 3.270833 | 11.80770713 | Botrimarina | 2795782 | Bacteria | Bacteria | 667 | 0 | NTclustered | gi|1712768844|gb|CP036350.1| | 2527962 | g11775 | i0 | 100 | 98.4819944598338 | 361 | 0 | 100 | 0 | 1 | 361 | 930470 | 930110 | Planctomycetes bacterium K2D chromosome, complete genome | blastn | 35552 | 667 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetes bacterium K2D | |||||
| 21494173 | 21494173 | PRJNA448207_P_NODE_2897_length_696_cov_1.642055_g2749_i0 | PRJNA448207 | 2897 | 696 | 1.642055 | 11.4287028 | Botrimarina | 2795782 | Bacteria | Bacteria | 1269 | 0 | NTclustered | gi|1712768844|gb|CP036350.1| | 2527962 | g2749 | i0 | 99.569 | 126.764367816092 | 696 | 3 | 100 | 0 | 1 | 696 | 4246711 | 4247406 | Planctomycetes bacterium K2D chromosome, complete genome | blastn | 88228 | 1269 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetes bacterium K2D | |||||
| 25318637 | 25318637 | PRJNA448207_P_NODE_5560_length_511_cov_1.461187_g5399_i0 | PRJNA448207 | 5560 | 511 | 1.461187 | 7.46666557 | Botrimarina | 2795782 | Bacteria | Bacteria | 933 | 0 | NTclustered | gi|1712768844|gb|CP036350.1| | 2527962 | g5399 | i0 | 99.609 | 107.592954990215 | 511 | 2 | 100 | 0 | 1 | 511 | 4246142 | 4246652 | Planctomycetes bacterium K2D chromosome, complete genome | blastn | 54980 | 933 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetes bacterium K2D | |||||
| 27138866 | 27138866 | PRJNA448207_P_NODE_23082_length_266_cov_1.823834_g22919_i0 | PRJNA448207 | 23082 | 266 | 1.823834 | 4.85139844 | Planctomycetota bacterium | 2026780 | Bacteria | Bacteria | 43.1 | 0.0341 | NR | MEM9881916.1 | 2026780 | g22919 | i0 | 47.2 | 0.597744360902256 | 53 | 26 | 57.5 | 1 | 45 | 197 | 37 | 89 | MEM9881916.1 thiamine phosphate synthase [Planctomycetota bacterium] | diamond | 159 | 43.1 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetota bacterium | |||||
| 28655147 | 28655147 | PRJNA448207_P_NODE_29787_length_245_cov_1.540698_g29624_i0 | PRJNA448207 | 29787 | 245 | 1.540698 | 3.7747101 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 88.2 | 3.15e-18 | NR | MBX3351449.1 | 2026777 | g29624 | i0 | 82.4 | 0.624489795918367 | 51 | 9 | 62.4 | 0 | 2 | 154 | 401 | 451 | MBX3351449.1 AI-2E family transporter [Phycisphaeraceae bacterium] | diamond | 153 | 88.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium | ||
| 28876062 | 28876062 | PRJNA448207_P_NODE_30888_length_244_cov_0.900585_g30725_i0 | PRJNA448207 | 30888 | 244 | 0.900585 | 2.1974274 | Opitutus sp. | 1913982 | Bacteria | Bacteria | 40.4 | 0.0487 | NR | HYD84722.1 | 1913982 | g30725 | i0 | 42.9 | 0.516393442622951 | 42 | 24 | 51.6 | 0 | 168 | 43 | 39 | 80 | HYD84722.1 hypothetical protein [Opitutus sp.] | diamond | 126 | 40.4 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. | |
| 30170714 | 30170714 | PRJNA448207_P_NODE_32512_length_242_cov_0.911243_g32349_i0 | PRJNA448207 | 32512 | 242 | 0.911243 | 2.20520806 | Phycisphaeraceae bacterium | 2026777 | Bacteria | Bacteria | 41.2 | 0.0176 | NR | MBX3353608.1 | 2026777 | g32349 | i0 | 58.7 | 0.570247933884298 | 46 | 16 | 57 | 1 | 207 | 70 | 13 | 55 | MBX3353608.1 hypothetical protein [Phycisphaeraceae bacterium] | diamond | 138 | 41.2 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Phycisphaerae | Phycisphaerales | Phycisphaeraceae | Phycisphaeraceae bacterium | ||
| 30644605 | 30644605 | PRJNA448207_P_NODE_14213_length_336_cov_1.121673_g14050_i0 | PRJNA448207 | 14213 | 336 | 1.121673 | 3.76882128 | Chthoniobacterales bacterium | 2201154 | Bacteria | Bacteria | 87 | 3.32e-17 | NR | MEO7933490.1 | 2201154 | g14050 | i0 | 48.3 | 0.794642857142857 | 89 | 44 | 79.5 | 1 | 267 | 1 | 13 | 99 | MEO7933490.1 aminomethyl-transferring glycine dehydrogenase [Chthoniobacterales bacterium] | diamond | 267 | 87 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Spartobacteria | Chthoniobacterales | Chthoniobacterales bacterium | |||
| 31023959 | 31023959 | PRJNA448207_P_NODE_20855_length_282_cov_0.779904_g20692_i0 | PRJNA448207 | 20855 | 282 | 0.779904 | 2.19932928 | Opitutia bacterium ISCC 51 | 2684115 | Bacteria | Bacteria | 44.3 | 0.0114 | NR | QXD22500.1 | 2684115 | g20692 | i0 | 40.9 | 0.468085106382979 | 44 | 26 | 46.8 | 0 | 113 | 244 | 91 | 134 | QXD22500.1 hypothetical protein F7C95_11090 [Opitutia bacterium ISCC 51] | diamond | 132 | 44.3 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutia bacterium ISCC 51 | ||||
| 31798923 | 31798923 | PRJNA448207_S_NODE_2457_length_290_cov_1.064516_g2446_i0 | PRJNA448207 | 2457 | 290 | 1.064516 | 3.0870964 | Bacteria | 2 | Bacteria | Bacteria | 137 | 9.72e-36 | NR | MBX3420633.1 | 2699754 | g2446 | i0 | 60.6 | 5.89655172413793 | 94 | 37 | 97.2 | 0 | 9 | 290 | 315 | 408 | MBX3420633.1 glutamate synthase subunit beta [Pirellulaceae bacterium] | diamond | 1710 | 137 | 1 | Bacteria | PVC group | Pseudomonadati | Planctomycetota | Planctomycetia | Pirellulales | Pirellulaceae | Pirellulaceae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;