RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA448207" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA448207 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22115351 22115351 PRJNA448207_P_NODE_29318_length_246_cov_0.890173_g29155_i0 PRJNA448207 29318 246 0.890173 2.18982558 Eumycetozoa 142796 Evosea other_Eukaryota 118 3.41e-29   NR XP_003285468.1 5786 g29155 i0 69.1 4.9390243902439 81 23 98.8 1 2 244 206 284 XP_003285468.1 serine hydroxymethyltransferase [Dictyostelium purpureum] diamond 1215 119 0.991596638655462 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29223606 29223606 PRJNA448207_P_NODE_27709_length_248_cov_0.880000_g27546_i0 PRJNA448207 27709 248 0.88 2.1824 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 105 5.65e-25   NR KAH3760608.1 1580589 g27546 i0 71 0.834677419354839 69 17 83.5 1 41 247 147 212 KAH3760608.1 cytosolic Fe-S cluster assembly factor Nbp35 [Pelomyxa schiedti] diamond 207 105 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
29728349 29728349 PRJNA448207_P_NODE_32450_length_242_cov_0.911243_g32287_i0 PRJNA448207 32450 242 0.911243 2.20520806 Dictyostelium purpureum 5786 Evosea other_Eukaryota 45.1 0.00523   NR XP_003290978.1 5786 g32287 i0 32.8 0.830578512396694 67 45 83.1 0 2 202 217 283 XP_003290978.1 uncharacterized protein DICPUDRAFT_98865 [Dictyostelium purpureum] diamond 201 45.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
30486890 30486890 PRJNA448207_P_NODE_29613_length_246_cov_0.890173_g29450_i0 PRJNA448207 29613 246 0.890173 2.18982558 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 105 9.14e-25   NR KAH3766145.1 1580589 g29450 i0 67.9 0.98780487804878 81 26 98.8 0 245 3 122 202 KAH3766145.1 GTP-binding protein YchF protein [Pelomyxa schiedti] diamond 243 105 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;