RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA446034" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA446034 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6195095 6195095 PRJNA446034_S_NODE_93785_length_158_cov_1.239669_g93748_i0 PRJNA446034 93785 158 1.239669 1.95867702 root 1 Root_unresolved Root_unresolved 58.4 2.81e-4   NTclustered gi|1572559275|emb|LS483518.1| 40477 g93748 i0 97.059 5.16455696202532 34 1 22 0 47 80 319235 319202 Mycoplasma mycoides subsp. capri strain GM12 genome assembly, chromosome: omosome blastn 816 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
11916984 11916984 PRJNA446034_S_NODE_47050_length_186_cov_3.120805_g47013_i0 PRJNA446034 47050 186 3.120805 5.8046973 Mycoplasma sp. 888 3108483 Bacteria Bacteria 52.8 0.016   NTclustered gi|2647500135|gb|CP141192.1| 3108483 g47013 i0 100 0.150537634408602 28 0 15 0 38 65 594550 594523 Mycoplasma sp. 888 chromosome, complete genome blastn 28 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. 888
14466727 14466727 PRJNA446034_S_NODE_114712_length_150_cov_3.327434_g114675_i0 PRJNA446034 114712 150 3.327434 4.991151 Metamycoplasma faucium 56142 Bacteria Bacteria 267 4.009999999999999e-67   NTclustered gi|2921905358|gb|CP182786.1| 56142 g114675 i0 98.667 2 150 2 100 0 1 150 33913 33764 Metamycoplasma faucium strain DC-333 chromosome, complete genome blastn 300 267 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma faucium
27076019 27076019 PRJNA446034_S_NODE_49062_length_184_cov_4.374150_g49025_i0 PRJNA446034 49062 184 4.37415 8.048436 Spiroplasma sp. SV19 2570468 Bacteria Bacteria 49.3 7.44e-5   NR WP_283272510.1 2570468 g49025 i0 40.4 2.78804347826087 57 32 92.9 1 11 181 162 216 WP_283272510.1 DNA adenine methylase [Spiroplasma sp. SV19] diamond 513 49.3 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. SV19
29886627 29886627 PRJNA446034_S_NODE_23271_length_218_cov_3.734807_g23234_i0 PRJNA446034 23271 218 3.734807 8.14187926 Mycoplasmopsis lipofaciens 114884 Bacteria Bacteria 89.4 6.88e-19   NR WP_027120500.1 114884 g23234 i0 59.7 2.95871559633028 72 29 99.1 0 217 2 71 142 WP_027120500.1 hypothetical protein [Mycoplasmopsis lipofaciens] diamond 645 89.4 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis lipofaciens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;