RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA446034", tax_phylum = "Kitrinoviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Kitrinoviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA446034 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9366346 9366346 PRJNA446034_S_NODE_86968_length_160_cov_18.926829_g86931_i0 PRJNA446034 86968 160 18.926829 30.2829264 Potexvirus pepini 3433856 Viruses Viruses 296 5.55e-76   NTclustered gi|2675378618|gb|PP116314.1| 112229 g86931 i0 100 88.925 160 0 100 0 1 160 6212 6371 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 14228 296 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
10642112 10642112 PRJNA446034_S_NODE_41489_length_191_cov_8.727273_g41452_i0 PRJNA446034 41489 191 8.727273 16.66909143 Tobamovirus plantagonis 3432885 Viruses Viruses 331 1.88e-86   NTclustered gi|395863865|gb|JQ319720.1| 51680 g41452 i0 97.906 41.130890052356 191 4 100 0 1 191 5103 4913 Ribgrass mosaic virus strain FSHS isolate U597, complete genome blastn 7856 331 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus plantagonis
13191672 13191672 PRJNA446034_S_NODE_1451_length_413_cov_20.470745_g1414_i0 PRJNA446034 1451 413 20.470745 84.54417685 Potexvirus trifolii 3433859 Viruses Viruses 418 3.4e-112   NTclustered gi|1843793423|gb|MN399742.1| 12188 g1414 i0 96.825 19.043583535109 252 5 88 2 2 251 2623 2873 White clover mosaic virus isolate Kreis Stormarn_18 RNA replication protein, triple gene block protein 1, triple gene block protein 2, triple gene block protein 3, and coat protein genes, complete cds blastn 7865 418 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus trifolii
15740684 15740684 PRJNA446034_S_NODE_14613_length_241_cov_8.225490_g14576_i0 PRJNA446034 14613 241 8.22549 19.8234309 Tobamovirus plantagonis 3432885 Viruses Viruses 390 4.05e-104   NTclustered gi|256692854|gb|GQ401365.1| 51680 g14576 i0 96.983 29.6597510373444 232 7 96 0 9 240 5512 5281 Ribgrass mosaic virus strain RMV Actinidia-AC isolate M2/A4, complete genome blastn 7148 390 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus plantagonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;