RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA446034" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA446034 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18290005 18290005 PRJNA446034_S_NODE_68975_length_170_cov_2.375940_g68938_i0 PRJNA446034 68975 170 2.37594 4.039098 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 56.5 0.001   NTclustered gi|1752388673|ref|XM_030997062.1| 7668 g68938 i0 100 0.176470588235294 30 0 18 0 32 61 1973 2002 PREDICTED: Strongylocentrotus purpuratus receptor-type tyrosine-protein phosphatase eta (LOC592545), mRNA blastn 30 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
23390233 23390233 PRJNA446034_S_NODE_113719_length_150_cov_7.451327_g113682_i0 PRJNA446034 113719 150 7.451327 11.1769905 Lytechinus pictus 7653 Echinodermata other_Eukaryota 54.7 0.003   NTclustered gi|2707382901|ref|XM_064111577.1| 7653 g113682 i0 100 0.753333333333333 29 0 19 0 19 47 2375 2403 PREDICTED: Lytechinus pictus beta-arrestin-1-like (LOC129278996), mRNA blastn 113 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;