RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA446034", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA446034 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20839735 20839735 PRJNA446034_S_NODE_21797_length_221_cov_5.184783_g21760_i0 PRJNA446034 21797 221 5.184783 11.45837043 Tepidiforma flava 3004094 Bacteria Bacteria 337 4.83e-88   NTclustered gi|2421951025|gb|CP115149.1| 3004094 g21760 i0 94.144 200.072398190045 222 12 100 1 1 221 249833 250054 Tepidiforma flava strain YIM 72310 chromosome, complete genome blastn 44216 337 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae Tepidiforma Tepidiforma flava
20840024 20840024 PRJNA446034_S_NODE_80937_length_163_cov_5.880952_g80900_i0 PRJNA446034 80937 163 5.880952 9.58595176 Dehalococcoides mccartyi 61435 Bacteria Bacteria 68.6 1.02e-13   NR PKH46022.1 61435 g80900 i0 83.8 4.89570552147239 37 6 68.1 0 51 161 15 51 PKH46022.1 GDP-mannose 4,6-dehydratase [Dehalococcoides mccartyi] diamond 798 68.6 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi
32762640 32762640 PRJNA446034_S_NODE_33800_length_201_cov_2.786585_g33763_i0 PRJNA446034 33800 201 2.786585 5.60103585 Chloroflexota bacterium 2026724 Bacteria Bacteria 94 9.55e-21   NR MDQ3779053.1 2026724 g33763 i0 69 1.76119402985075 58 18 86.6 0 177 4 315 372 MDQ3779053.1 sulfite oxidase [Chloroflexota bacterium] diamond 354 94 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;