RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA446034", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA446034 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17669574 17669574 PRJNA446034_S_NODE_36874_length_197_cov_2.325000_g36837_i0 PRJNA446034 36874 197 2.325 4.58025 Chaetoceros 49237 SAR_Eukaryotes SAR_Eukaryotes 130 7.66e-26   NTclustered gi|2156401054|dbj|LC537471.1| 426638 g36837 i0 88.679 18.2944162436548 106 12 54 0 89 194 1864 1969 Chaetoceros tenuissimus NIES-3715 chloroplast DNA, complete genome blastn 3604 130 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Chaetocerotales Chaetocerotaceae Chaetoceros Chaetoceros tenuissimus
25318112 25318112 PRJNA446034_S_NODE_27240_length_211_cov_2.172414_g27203_i0 PRJNA446034 27240 211 2.172414 4.58379354 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 237 4.77e-58   NTclustered gi|2392241427|gb|OM827248.1| 1923973 g27203 i0 87.081 89.5924170616114 209 27 99 0 3 211 112420 112628 Actinocyclus sp. (in: Bacillariophyta) chloroplast, complete genome blastn 18904 239 0.99163179916318 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Coscinodiscales Hemidiscaceae Actinocyclus Actinocyclus sp. (in: diatoms)
28055048 28055048 PRJNA446034_S_NODE_8385_length_273_cov_3.466102_g8348_i0 PRJNA446034 8385 273 3.466102 9.46245846 Fistulifera solaris 1519565 SAR_Eukaryotes SAR_Eukaryotes 119 2.45e-29   NR GAX23430.1 1519565 g8348 i0 89.6 0.736263736263736 67 7 73.6 0 3 203 463 529 GAX23430.1 aspartate kinase [Fistulifera solaris] diamond 201 119 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;