RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA446034", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA446034 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20839719 20839719 PRJNA446034_S_NODE_18517_length_229_cov_5.088542_g18480_i0 PRJNA446034 18517 229 5.088542 11.65276118 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 422 1.35e-113   NTclustered gi|124809621|ref|XM_001348594.1| 36329 g18480 i0 100 2.06550218340611 228 0 99 0 1 228 1564 1791 Plasmodium falciparum 3D7 U3 small nucleolar RNA-associated protein 12, putative (PF3D7_1448000), partial mRNA blastn 473 422 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum
20839952 20839952 PRJNA446034_S_NODE_64477_length_173_cov_1.580882_g64440_i0 PRJNA446034 64477 173 1.580882 2.73492586 Plasmodium falciparum 5833 SAR_Eukaryotes SAR_Eukaryotes 252 1.33e-62   NTclustered gi|124506524|ref|XM_001351824.1| 36329 g64440 i0 93.023 3.02890173410405 172 12 99 0 1 172 696 525 Plasmodium falciparum 3D7 XAP-5 DNA binding protein, putative (PF3D7_0530600), partial mRNA blastn 524 252 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium falciparum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;