RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA446034", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA446034 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18943474 18943474 PRJNA446034_S_NODE_74575_length_167_cov_1.638462_g74538_i0 PRJNA446034 74575 167 1.638462 2.73623154 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 89 6.89e-19   NR MDA1273307.1 2026799 g74538 i0 81.8 0.988023952095808 55 10 98.8 0 165 1 366 420 MDA1273307.1 DUF1549 domain-containing protein [Verrucomicrobiota bacterium] diamond 165 89 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27044434 27044434 PRJNA446034_S_NODE_45222_length_188_cov_1.695364_g45185_i0 PRJNA446034 45222 188 1.695364 3.18728432 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 73.6 2.4e-13   NR MES2470011.1 2026799 g45185 i0 87.5 0.638297872340426 40 5 63.8 0 176 57 458 497 MES2470011.1 sigma-70 family RNA polymerase sigma factor [Verrucomicrobiota bacterium] diamond 120 73.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28307830 28307830 PRJNA446034_S_NODE_54086_length_180_cov_3.433566_g54049_i0 PRJNA446034 54086 180 3.433566 6.1804188 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 67.4 3.05e-11   NR MES2983521.1 2026799 g54049 i0 69 0.7 42 13 70 0 54 179 1 42 MES2983521.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 126 67.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31940803 31940803 PRJNA446034_S_NODE_88737_length_160_cov_1.869919_g88700_i0 PRJNA446034 88737 160 1.869919 2.9918704 Prosthecobacter sp. 1965333 Bacteria Bacteria 67 3.74e-12   NR WP_300195712.1 1965333 g88700 i0 69.4 1.8375 49 15 91.9 0 13 159 1 49 WP_300195712.1 hypothetical protein [Prosthecobacter sp.] diamond 294 67 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;