RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA446034", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA446034 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26917845 26917845 PRJNA446034_S_NODE_76042_length_166_cov_2.434109_g76005_i0 PRJNA446034 76042 166 2.434109 4.04062094 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 50.1 2.91e-5   NR MCA9751979.1 2026742 g76005 i0 41.8 1.96987951807229 55 32 99.4 0 1 165 24 78 MCA9751979.1 4'-phosphopantetheinyl transferase superfamily protein [Gemmatimonadota bacterium] diamond 327 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27329043 27329043 PRJNA446034_S_NODE_7043_length_284_cov_2.356275_g7006_i0 PRJNA446034 7043 284 2.356275 6.691821 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 122 4.8799999999999996e-32   NR MBL0169206.1 2026741 g7006 i0 62.8 1.98591549295775 94 35 99.3 0 1 282 35 128 MBL0169206.1 DUF4397 domain-containing protein [Gemmatimonadaceae bacterium] diamond 564 122 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
28086613 28086613 PRJNA446034_S_NODE_40225_length_193_cov_2.852564_g40188_i0 PRJNA446034 40225 193 2.852564 5.50544852 Gemmatimonas sp. 1962908 Bacteria Bacteria 43.9 0.00685   NR WP_310570667.1 1962908 g40188 i0 78.3 1.07253886010363 23 5 35.8 0 3 71 238 260 WP_310570667.1 DUF4397 domain-containing protein [Gemmatimonas sp.] diamond 207 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;