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contig_metadata

13 rows where bioproject = "PRJNA438687" and tax_superkingdom = "Archaea"

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tax_kingdom 2

tax_superkingdom 1

  • Archaea · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA438687 · 13 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3642225 3642225 PRJNA438687_S_NODE_7923_length_153_cov_4.652542_g7833_i0 PRJNA438687 7923 153 4.652542 7.11838926 root 1 Root_unresolved Root_unresolved 278 1.9e-70   NTclustered gi|507148322|ref|NR_103125.1| 2223 g7833 i0 99.346 12.4509803921569 153 1 100 0 1 153 663 511 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 1905 278 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
6194203 6194203 PRJNA438687_S_NODE_2845_length_265_cov_3.926087_g2755_i0 PRJNA438687 2845 265 3.926087 10.40413055 Methanothrix 2222 Archaea Archaea 473 4.3599999999999987e-129   NTclustered gi|507148322|ref|NR_103125.1| 2223 g2755 i0 98.868 174.988679245283 265 3 100 0 1 265 2615 2351 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 46372 473 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
8088498 8088498 PRJNA438687_S_NODE_3167_length_251_cov_3.314815_g3077_i0 PRJNA438687 3167 251 3.314815 8.32018565 uncultured Methanocorpusculum sp. 176309 Archaea Archaea 455 1.48e-123   NTclustered gi|2621784620|emb|OY781078.1| 176309 g3077 i0 100 139.549800796813 246 0 98 0 6 251 399198 399443 MAG: uncultured Methanocorpusculum sp. isolate da2e5db0-0b8c-42b4-9ad7-c040378b94a4 genome assembly, chromosome: 1 blastn 35027 455 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum uncultured Methanocorpusculum sp.
8088598 8088598 PRJNA438687_S_NODE_8227_length_150_cov_1.913043_g8137_i0 PRJNA438687 8227 150 1.913043 2.8695645 Methanomassiliicoccaceae archaeon 2052168 Archaea Archaea 58.4 2.63e-4   NTclustered gi|2621703346|emb|OY760646.1| 2052168 g8137 i0 100 0.206666666666667 31 0 21 0 1 31 162562 162532 MAG: Methanomassiliicoccaceae archaeon isolate 2dded12f-1c8b-4e4a-b374-f87b1937d54c genome assembly, chromosome: 1 blastn 31 58.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae   Methanomassiliicoccaceae archaeon
12569979 12569979 PRJNA438687_S_NODE_1490_length_334_cov_4.090301_g1400_i0 PRJNA438687 1490 334 4.090301 13.66160534 Methanothrix 2222 Archaea Archaea 571 1.95e-158   NTclustered gi|507148322|ref|NR_103125.1| 2223 g1400 i0 97.598 104.88622754491 333 8 99 0 2 334 369 37 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 35032 571 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
12569989 12569989 PRJNA438687_S_NODE_2230_length_295_cov_2.888462_g2140_i0 PRJNA438687 2230 295 2.888462 8.5209629 Methanothrix 2222 Archaea Archaea 518 2.25e-142   NTclustered gi|507148322|ref|NR_103125.1| 2223 g2140 i0 98.305 41.6372881355932 295 5 100 0 1 295 1812 1518 Methanosaeta concilii strain GP6 23S ribosomal RNA gene, complete sequence blastn 12283 518 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix soehngenii
12570077 12570077 PRJNA438687_S_NODE_6130_length_177_cov_2.838028_g6040_i0 PRJNA438687 6130 177 2.838028 5.02330956 root 1 Root_unresolved Root_unresolved 311 2.23e-80   NTclustered gi|636559125|ref|NR_115182.1| 2193 g6040 i0 98.305 105.994350282486 177 3 100 0 1 177 1336 1160 Methanocorpusculum parvum strain DSM 3823 16S ribosomal RNA, partial sequence blastn 18761 311 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum parvum
13844726 13844726 PRJNA438687_S_NODE_3651_length_233_cov_1.661616_g3561_i0 PRJNA438687 3651 233 1.661616 3.87156528 root 1 Root_unresolved Root_unresolved 425 1.07e-114   NTclustered gi|636559125|ref|NR_115182.1| 2193 g3561 i0 99.571 99.9742489270386 233 1 100 0 1 233 468 700 Methanocorpusculum parvum strain DSM 3823 16S ribosomal RNA, partial sequence blastn 23294 425 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum parvum
13844740 13844740 PRJNA438687_S_NODE_4391_length_212_cov_3.338983_g4301_i0 PRJNA438687 4391 212 3.338983 7.07864396 Methanocorpusculum 2192 Archaea Archaea 359 9.81e-95   NTclustered gi|470481509|ref|NR_076479.1| 83984 g4301 i0 97.608 112.075471698113 209 5 99 0 3 211 1017 1225 Methanocorpusculum labreanum strain Z 23S ribosomal RNA gene, complete sequence blastn 23760 359 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum labreanum
18287028 18287028 PRJNA438687_S_NODE_7435_length_159_cov_1.467742_g7345_i0 PRJNA438687 7435 159 1.467742 2.33370978 Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016) 1867261 Archaea Archaea 54.7 0.004   NTclustered gi|2551788334|gb|CP130488.1| 1867261 g7345 i0 94.286 0.220125786163522 35 2 22 0 77 111 1407952 1407918 MAG: Candidatus Methanosuratincola petrocarbonis isolate LWZ-6 chromosome, complete genome blastn 35 54.7 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanosuratincola (ex Vanwonterghem et al. 2016) Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016)
24043112 24043112 PRJNA438687_S_NODE_7519_length_158_cov_1.243902_g7429_i0 PRJNA438687 7519 158 1.243902 1.96536516 root 1 Root_unresolved Root_unresolved 287 3.29e-73   NTclustered gi|745147048|gb|KP258755.1| 176232 g7429 i0 99.367 100 158 1 100 0 1 158 579 422 Uncultured Methanosaetaceae archaeon clone A151_1 16S ribosomal RNA gene, partial sequence blastn 15800 287 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae   uncultured Methanotrichaceae archaeon
24661625 24661625 PRJNA438687_S_NODE_7840_length_154_cov_2.588235_g7750_i0 PRJNA438687 7840 154 2.588235 3.9858819 Methanothrix sp. 90426 Archaea Archaea 252 1.16e-62   NTclustered gi|2626216449|emb|OY821645.1| 90426 g7750 i0 96.104 14.9480519480519 154 6 100 0 1 154 826747 826900 MAG: Methanothrix sp. isolate d1628e35-7b52-4540-a147-c2ca1342adce genome assembly, chromosome: 1 blastn 2302 252 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanotrichales Methanotrichaceae Methanothrix Methanothrix sp.
25317356 25317356 PRJNA438687_S_NODE_2480_length_281_cov_3.093496_g2390_i0 PRJNA438687 2480 281 3.093496 8.69272376 root 1 Root_unresolved Root_unresolved 429 1.02e-115   NTclustered gi|636559125|ref|NR_115182.1| 2193 g2390 i0 94.326 101.950177935943 282 12 99 4 1 280 895 1174 Methanocorpusculum parvum strain DSM 3823 16S ribosomal RNA, partial sequence blastn 28648 429 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanocorpusculaceae Methanocorpusculum Methanocorpusculum parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;