RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA438687" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA438687 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18287028 18287028 PRJNA438687_S_NODE_7435_length_159_cov_1.467742_g7345_i0 PRJNA438687 7435 159 1.467742 2.33370978 Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016) 1867261 Archaea Archaea 54.7 0.004   NTclustered gi|2551788334|gb|CP130488.1| 1867261 g7345 i0 94.286 0.220125786163522 35 2 22 0 77 111 1407952 1407918 MAG: Candidatus Methanosuratincola petrocarbonis isolate LWZ-6 chromosome, complete genome blastn 35 54.7 1 Archaea   Thermoproteati Thermoproteota Methanosuratincolia Candidatus Methanomethylicales Candidatus Methanomethylicaceae Candidatus Methanosuratincola (ex Vanwonterghem et al. 2016) Candidatus Methanosuratincola petrocarbonis (ex Vanwonterghem et al. 2016)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;