RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA438687" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438687 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1710239 1710239 PRJNA438687_S_NODE_7082_length_163_cov_11.023438_g6992_i0 PRJNA438687 7082 163 11.023438 17.96820394 Donax denticulatus 2970931 Mollusca Mollusca 73.1 1.04e-8   NTclustered gi|2284878616|gb|OP210027.1| 2970931 g6992 i0 75.776 61.7116564417178 161 29 96 8 1 157 1130 1284 Donax denticulatus voucher MNHN:2013-7615 large subunit ribosomal RNA gene, partial sequence blastn 10059 73.1 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Cardiida Donacidae Donax Donax denticulatus
8744157 8744157 PRJNA438687_S_NODE_4207_length_216_cov_9.088398_g4117_i0 PRJNA438687 4207 216 9.088398 19.63093968 Valvatidae 54980 Mollusca Mollusca 78.7 3.14e-10   NTclustered gi|1486856880|dbj|LC377836.1| 96458 g4117 i0 83.908 24.1990740740741 87 9 39 5 1 84 421 505 Valvata hokkaidoensis Va51 gene for 28S ribosomal RNA, partial sequence blastn 5227 78.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Valvatidae Valvata Valvata hokkaidoensis
19561209 19561209 PRJNA438687_S_NODE_3336_length_243_cov_204.754808_g3246_i0 PRJNA438687 3336 243 204.754808 497.55418344 Bradybaena similaris 145626 Mollusca Mollusca 394 3.16e-105   NTclustered gi|2913002568|dbj|AP039611.1| 145626 g3246 i0 95.885 101.004115226337 243 10 100 0 1 243 1728247 1728489 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, sequence_id: unanchored2, sequence blastn 24544 394 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
24043081 24043081 PRJNA438687_S_NODE_6039_length_178_cov_10.069930_g5949_i0 PRJNA438687 6039 178 10.06993 17.9244754 Metazoa 33208 Mollusca Mollusca 93.5 8.87e-15   NTclustered gi|1392244409|gb|MH392728.1| 56141 g5949 i0 95 33.5393258426966 60 2 33 1 1 59 2148 2207 Oncomelania hupensis isolate Sanshan, Wuhu large subunit ribosomal RNA gene, partial sequence blastn 5970 93.5 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Littorinimorpha Pomatiopsidae Oncomelania Oncomelania hupensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;