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contig_metadata

20 rows where bioproject = "PRJNA438687" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438687 · 20 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1091247 1091247 PRJNA438687_S_NODE_7481_length_158_cov_3.666667_g7391_i0 PRJNA438687 7481 158 3.666667 5.79333386 Mus 10088 Chordata Chordata 292 7.07e-75   NTclustered gi|846387786|dbj|LC061991.1| 10090 g7391 i0 100 100 158 0 100 0 1 158 748 591 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 15800 292 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1091249 1091249 PRJNA438687_S_NODE_7521_length_158_cov_1.227642_g7431_i0 PRJNA438687 7521 158 1.227642 1.93967436 Mus 10088 Chordata Chordata 287 3.29e-73   NTclustered gi|846387586|dbj|LC061956.1| 10090 g7431 i0 99.367 100 158 1 100 0 1 158 1377 1220 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 15800 287 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1091260 1091260 PRJNA438687_S_NODE_8021_length_152_cov_2.324786_g7931_i0 PRJNA438687 8021 152 2.324786 3.53367472 Mus 10088 Chordata Chordata 281 1.46e-71   NTclustered gi|2474805502|gb|MZ353164.1| 10090 g7931 i0 100 100 152 0 100 0 1 152 566 415 Mus musculus isolate NS112M cytochrome oxidase subunit 1 (COX1) gene, partial cds; mitochondrial blastn 15200 281 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3642141 3642141 PRJNA438687_S_NODE_3203_length_250_cov_2.553488_g3113_i0 PRJNA438687 3203 250 2.553488 6.38372 Mus 10088 Chordata Chordata 462 8.83e-126   NTclustered gi|846387786|dbj|LC061991.1| 10090 g3113 i0 100 100 250 0 100 0 1 250 844 1093 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 25000 462 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4919350 4919350 PRJNA438687_S_NODE_5004_length_199_cov_1.414634_g4914_i0 PRJNA438687 5004 199 1.414634 2.81512166 Artiodactyla 91561 Chordata Chordata 326 9.22e-85   NTclustered gi|2871703922|ref|XM_070457737.1| 9874 g4914 i0 97.872 1477.83417085427 188 4 94 0 6 193 741 928 PREDICTED: Odocoileus virginianus double C2-like domain-containing protein gamma (LOC110129415), mRNA blastn 294089 326 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Odocoileus Odocoileus virginianus
7469174 7469174 PRJNA438687_S_NODE_4686_length_205_cov_1.858824_g4596_i0 PRJNA438687 4686 205 1.858824 3.8105892 Mus 10088 Chordata Chordata 379 7.229999999999999e-101   NTclustered gi|846387443|dbj|LC061935.1| 10090 g4596 i0 100 100 205 0 100 0 1 205 1283 1487 Mus musculus mitochondrion DNA, including ND2, tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, COX1 genes, complete sequence, sequence_id: (4078..6548)_5 blastn 20500 379 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7469205 7469205 PRJNA438687_S_NODE_6806_length_167_cov_2.265152_g6716_i0 PRJNA438687 6806 167 2.265152 3.78280384 Mus 10088 Chordata Chordata 309 7.53e-80   NTclustered gi|846388176|dbj|LC062059.1| 10090 g6716 i0 100 100 167 0 100 0 1 167 247 413 Mus musculus mitochondrion DNA, including Cytb, tRNA-Tyr, tRNA-Pro, tRNA-Phe, 12S rRNA genes and D-loop, complete sequence, sequence_id: (14446..634)_12 blastn 16700 309 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10019317 10019317 PRJNA438687_S_NODE_3488_length_238_cov_3.433498_g3398_i0 PRJNA438687 3488 238 3.433498 8.17172524 Mus 10088 Chordata Chordata 436 5.049999999999999e-118   NTclustered gi|846387786|dbj|LC061991.1| 10090 g3398 i0 100 99.1596638655462 236 0 99 0 1 236 1312 1077 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 23600 436 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11294359 11294359 PRJNA438687_S_NODE_6269_length_175_cov_3.428571_g6179_i0 PRJNA438687 6269 175 3.428571 5.99999925 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 311 2.2e-80   NTclustered gi|2633701433|ref|XR_009739310.1| 9906 g6179 i0 99.415 874.777142857143 171 1 98 0 1 171 1009 1179 PREDICTED: Bos javanicus uncharacterized LOC133256814 (LOC133256814), ncRNA blastn 153086 311 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
11914034 11914034 PRJNA438687_S_NODE_30_length_988_cov_3.317943_g14_i0 PRJNA438687 30 988 3.317943 32.78127684 Bos javanicus 9906 Chordata Chordata 1698 0   NTclustered gi|2633849877|ref|XR_009735763.1| 9906 g14 i0 97.674 123.313765182186 989 21 100 2 1 988 311 1298 PREDICTED: Bos javanicus uncharacterized LOC133245779 (LOC133245779), ncRNA blastn 121834 1698 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
12570018 12570018 PRJNA438687_S_NODE_3490_length_238_cov_2.817734_g3400_i0 PRJNA438687 3490 238 2.817734 6.70620692 Mus 10088 Chordata Chordata 440 3.899999999999999e-119   NTclustered gi|846387586|dbj|LC061956.1| 10090 g3400 i0 100 100 238 0 100 0 1 238 2181 1944 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 23800 440 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12570056 12570056 PRJNA438687_S_NODE_5150_length_195_cov_4.075000_g5060_i0 PRJNA438687 5150 195 4.075 7.94625 Metazoa 33208 Chordata Chordata 355 1.15e-93   NTclustered gi|846387676|dbj|LC061971.1| 10090 g5060 i0 99.487 100 195 1 100 0 1 195 1462 1656 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_20 blastn 19500 355 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12570072 12570072 PRJNA438687_S_NODE_5830_length_183_cov_1.560811_g5740_i0 PRJNA438687 5830 183 1.560811 2.85628413 Mus 10088 Chordata Chordata 339 1.07e-88   NTclustered gi|756142290|gb|KP260515.1| 10090 g5740 i0 100 100 183 0 100 0 1 183 2950 2768 Mus musculus strain ME mitochondrion, complete genome blastn 18300 339 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12570081 12570081 PRJNA438687_S_NODE_6350_length_174_cov_1.546763_g6260_i0 PRJNA438687 6350 174 1.546763 2.69136762 Mus 10088 Chordata Chordata 322 1.01e-83   NTclustered gi|74148625|dbj|AK140187.1| 10090 g6260 i0 100 100 174 0 100 0 1 174 352 525 Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230333I23 product:NADH dehydrogenase 4, mitochondrial, full insert sequence blastn 17400 322 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
14464011 14464011 PRJNA438687_S_NODE_5152_length_195_cov_3.356250_g5062_i0 PRJNA438687 5152 195 3.35625 6.5446875 Mus musculus 10090 Chordata Chordata 361 2.46e-95   NTclustered gi|2548330513|gb|OQ915115.1| 10090 g5062 i0 100 41.7948717948718 195 0 100 0 1 195 6715 6909 Mus musculus clone BAC JH_40 45S ribosomal RNA and 18S ribosomal RNA genes, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, 28S ribosomal RNA gene, 3' and 5' external transcribed spacers, complete sequence; and 18S ribosomal RNA gene, partial sequence blastn 8150 361 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15118985 15118985 PRJNA438687_S_NODE_4632_length_206_cov_3.859649_g4542_i0 PRJNA438687 4632 206 3.859649 7.95087694 Mus 10088 Chordata Chordata 381 2.0199999999999994e-101   NTclustered gi|846387586|dbj|LC061956.1| 10090 g4542 i0 100 100 206 0 100 0 1 206 765 970 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 20600 381 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20836932 20836932 PRJNA438687_S_NODE_6317_length_174_cov_6.194245_g6227_i0 PRJNA438687 6317 174 6.194245 10.7779863 Pyrgilauda ruficollis 221976 Chordata Chordata 52.8 0.015   NTclustered gi|2032788342|ref|XR_005956977.1| 221976 g6227 i0 100 0.160919540229885 28 0 16 0 56 83 2444 2417 PREDICTED: Pyrgilauda ruficollis 28S ribosomal RNA (LOC121365247), rRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Passeridae Pyrgilauda Pyrgilauda ruficollis
21493118 21493118 PRJNA438687_S_NODE_937_length_385_cov_2.880000_g848_i0 PRJNA438687 937 385 2.88 11.088 Mus 10088 Chordata Chordata 706 0   NTclustered gi|846387586|dbj|LC061956.1| 10090 g848 i0 99.74 100 385 1 100 0 1 385 2156 2540 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 38500 706 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22112026 22112026 PRJNA438687_S_NODE_958_length_383_cov_3.132184_g869_i0 PRJNA438687 958 383 3.132184 11.99626472 Mus musculus 10090 Chordata Chordata 279 1.5400000000000002e-70   NTclustered gi|2904935057|gb|PQ737980.1| 10090 g869 i0 82.972 8.36031331592689 323 41 81 8 1 312 65 384 Mus musculus lncRNA390 lncRNA, complete sequence blastn 3202 279 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24661624 24661624 PRJNA438687_S_NODE_7760_length_155_cov_2.216667_g7670_i0 PRJNA438687 7760 155 2.216667 3.43583385 Mus musculus 10090 Chordata Chordata 276 6.95e-70   NTclustered gi|85069293|gb|DQ322708.1| 10090 g7670 i0 98.71 243.587096774194 155 2 100 0 1 155 2700 2854 Mus musculus clone fosmid G135P66076F10 sequence from forward end blastn 37756 276 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;