RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA438687", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA438687 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1710224 1710224 PRJNA438687_S_NODE_6382_length_173_cov_25.289855_g6292_i0 PRJNA438687 6382 173 25.289855 43.75144915 uncultured Synergistota bacterium 447826 Bacteria Bacteria 292 7.87e-75   NTclustered gi|401555891|gb|JX010942.1| 447826 g6292 i0 97.11 101.913294797688 173 5 100 0 1 173 655 483 Uncultured Synergistetes bacterium clone 7P51 16S ribosomal RNA gene, partial sequence blastn 17631 292 1 Bacteria   Thermotogati Synergistota         uncultured Synergistota bacterium
18287001 18287001 PRJNA438687_S_NODE_6015_length_179_cov_1.944444_g5925_i0 PRJNA438687 6015 179 1.944444 3.48055476 Fretibacterium fastidiosum 651822 Bacteria Bacteria 174 3.1e-39   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g5925 i0 85.976 4.37430167597765 164 21 91 2 1 163 69683 69845 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 783 174 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
23387454 23387454 PRJNA438687_S_NODE_1719_length_321_cov_7.251748_g1629_i0 PRJNA438687 1719 321 7.251748 23.27811108 Fretibacterium fastidiosum 651822 Bacteria Bacteria 261 4.6e-65   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g1629 i0 81.905 132.255451713396 315 51 98 6 9 321 2281806 2282116 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 42454 261 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;