RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA438687" and tax_clade = "named eukaryotic clones"

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tax_superkingdom 1

tax_clade 1

  • named eukaryotic clones · 1 ✖

bioproject 1

  • PRJNA438687 · 1 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17012716 17012716 PRJNA438687_S_NODE_8034_length_152_cov_1.957265_g7944_i0 PRJNA438687 8034 152 1.957265 2.9750428 uncultured eukaryote HF0200_37F04 542502 Root_unresolved Root_unresolved 80.5 5.7e-11   NTclustered gi|193084614|gb|EU795185.1| 542502 g7944 i0 89.231 50.3881578947368 65 5 43 2 83 147 3517 3455 Uncultured eukaryote HF0200_37F04 genomic sequence blastn 7659 80.5 1 Eukaryota named eukaryotic clones             uncultured eukaryote HF0200_37F04

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;