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contig_metadata

12 rows where bioproject = "PRJNA438687" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 12 ✖

bioproject 1

  • PRJNA438687 · 12 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4262254 4262254 PRJNA438687_S_NODE_1304_length_347_cov_38.173077_g1214_i0 PRJNA438687 1304 347 38.173077 132.46057719 uncultured delta proteobacterium 34034 Bacteria Bacteria 551 2.659999999999999e-152   NTclustered gi|451917408|gb|KC451272.1| 34034 g1214 i0 97.516 89.0778097982709 322 8 93 0 1 322 322 1 Uncultured delta proteobacterium clone RLBp3211 16S ribosomal RNA gene, partial sequence blastn 30910 551 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
4262314 4262314 PRJNA438687_S_NODE_4064_length_220_cov_6.329730_g3974_i0 PRJNA438687 4064 220 6.32973 13.925406 uncultured delta proteobacterium 34034 Bacteria Bacteria 52.8 0.019   NTclustered gi|2874253674|emb|OY969108.1| 34034 g3974 i0 81.429 0.318181818181818 70 8 31 5 151 218 1542762 1542828 MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 blastn 70 52.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
10019343 10019343 PRJNA438687_S_NODE_4868_length_201_cov_27.319277_g4778_i0 PRJNA438687 4868 201 27.319277 54.91174677 Bacteria 2 Bacteria Bacteria 350 5.539999999999999e-92   NTclustered gi|1214630307|gb|MF438913.1| 34034 g4778 i0 98.01 99.4427860696517 201 4 100 0 1 201 365 165 Uncultured delta proteobacterium clone cafs1646 16S ribosomal RNA gene, partial sequence blastn 19988 350 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
10639146 10639146 PRJNA438687_S_NODE_2069_length_302_cov_17.797753_g1979_i0 PRJNA438687 2069 302 17.797753 53.74921406 uncultured delta proteobacterium 34034 Bacteria Bacteria 442 1.4299999999999994e-119   NTclustered gi|451917199|gb|KC451063.1| 34034 g1979 i0 95.341 93.7384105960265 279 11 92 2 1 277 279 1 Uncultured delta proteobacterium clone RLBp139 16S ribosomal RNA gene, partial sequence blastn 28309 442 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11294325 11294325 PRJNA438687_S_NODE_4709_length_204_cov_42.828402_g4619_i0 PRJNA438687 4709 204 42.828402 87.36994008 Myxococcota 2818505 Bacteria Bacteria 355 1.21e-93   NTclustered gi|162288851|gb|EU300278.1| 34034 g4619 i0 98.039 99.8333333333333 204 4 100 0 1 204 491 288 Uncultured delta proteobacterium clone GASP-KC3S2_H06 16S ribosomal RNA gene, partial sequence blastn 20366 355 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11294352 11294352 PRJNA438687_S_NODE_6029_length_178_cov_100.566434_g5939_i0 PRJNA438687 6029 178 100.566434 179.00825252 Bacteria 2 Bacteria Bacteria 324 2.89e-84   NTclustered gi|146428689|gb|EF219505.1| 34034 g5939 i0 99.438 99.7415730337079 178 1 100 0 1 178 679 502 Uncultured delta proteobacterium clone AI-1F_B06 16S ribosomal RNA gene, partial sequence blastn 17754 324 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
11294369 11294369 PRJNA438687_S_NODE_6649_length_169_cov_8.955224_g6559_i0 PRJNA438687 6649 169 8.955224 15.13432856 Bacteria 2 Bacteria Bacteria 313 5.859999999999999e-81   NTclustered gi|161722964|gb|EU283354.1| 34034 g6559 i0 100 100 169 0 100 0 1 169 458 290 Uncultured delta proteobacterium clone AS15 16S ribosomal RNA gene, complete sequence blastn 16900 313 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
12570075 12570075 PRJNA438687_S_NODE_6030_length_178_cov_84.356643_g5940_i0 PRJNA438687 6030 178 84.356643 150.15482454 Aetherobacter 888829 Bacteria Bacteria 324 2.89e-84   NTclustered gi|119952009|dbj|AB288569.1| 34034 g5940 i0 99.438 99.9269662921348 178 1 100 0 1 178 823 646 Uncultured delta proteobacterium gene for 16S rRNA, partial sequence, clone: RPS-H3 blastn 17787 324 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
13844754 13844754 PRJNA438687_S_NODE_5131_length_195_cov_36.237500_g5041_i0 PRJNA438687 5131 195 36.2375 70.663125 Bacteria 2 Bacteria Bacteria 353 4.12e-93   NTclustered gi|1330559837|gb|MG804461.1| 34034 g5041 i0 100 96.4102564102564 191 0 98 0 1 191 170 360 Uncultured delta proteobacterium clone 1d_90523 16S ribosomal RNA gene, partial sequence blastn 18800 353 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
15119051 15119051 PRJNA438687_S_NODE_7732_length_155_cov_109.858333_g7642_i0 PRJNA438687 7732 155 109.858333 170.28041615 Bacteria 2 Bacteria Bacteria 287 3.21e-73   NTclustered gi|679036717|gb|KM016287.1| 34034 g7642 i0 100 98.6129032258064 155 0 100 0 1 155 923 769 Uncultured delta proteobacterium clone CO2-OTU2 16S ribosomal RNA gene, partial sequence blastn 15285 287 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18286906 18286906 PRJNA438687_S_NODE_1955_length_308_cov_31.366300_g1865_i0 PRJNA438687 1955 308 31.3663 96.608204 uncultured delta proteobacterium 34034 Bacteria Bacteria 357 5.44e-94   NTclustered gi|60266418|gb|AY921872.1| 34034 g1865 i0 90 87.75 280 23 91 5 1 279 276 1 Uncultured delta proteobacterium clone AKYH836 16S ribosomal RNA gene, partial sequence blastn 27027 357 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18286925 18286925 PRJNA438687_S_NODE_2715_length_270_cov_130.825532_g2625_i0 PRJNA438687 2715 270 130.825532 353.2289364 uncultured delta proteobacterium 34034 Bacteria Bacteria 449 7.51e-122   NTclustered gi|151350053|gb|EF662762.1| 34034 g2625 i0 97.348 98.3037037037037 264 7 98 0 7 270 18 281 Uncultured delta proteobacterium clone GASP-MA1W3_B08 16S ribosomal RNA gene, partial sequence blastn 26542 449 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;