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contig_metadata

30 rows where bioproject = "PRJNA438687", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 30 ✖

tax_clade 1

  • Sar · 30 ✖

bioproject 1

  • PRJNA438687 · 30 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1091229 1091229 PRJNA438687_S_NODE_6641_length_169_cov_14.067164_g6551_i0 PRJNA438687 6641 169 14.067164 23.77350716 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 200 4.76e-47   NTclustered gi|1341107387|gb|MG256837.1| 82952 g6551 i0 96.694 71.5621301775148 121 3 72 1 49 169 389 270 Pythium violae strain S30c internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 12094 202 0.99009900990099 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium violae
2366593 2366593 PRJNA438687_S_NODE_1582_length_329_cov_26.646259_g1492_i0 PRJNA438687 1582 329 26.646259 87.66619211 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 580 3.19e-161   NTclustered gi|403181314|gb|JN635236.1| 129359 g1492 i0 98.485 100.282674772036 330 4 100 1 1 329 615 944 Phytophthora porri isolate WPC10728A880 18S ribosomal RNA gene, partial sequence blastn 32993 580 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora porri
2366640 2366640 PRJNA438687_S_NODE_4982_length_199_cov_5.487805_g4892_i0 PRJNA438687 4982 199 5.487805 10.92073195 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 333 5.509999999999998e-87   NTclustered gi|338798108|gb|HQ665169.1| 49446 g4892 i0 96.97 100 198 6 99 0 1 198 986 789 Pythium pachycaule isolate CBS 227.88 28S large subunit ribosomal RNA gene, partial sequence blastn 19900 333 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium pachycaule
2366696 2366696 PRJNA438687_S_NODE_7682_length_156_cov_1.743802_g7592_i0 PRJNA438687 7682 156 1.743802 2.72033112 Phytopythium 795339 SAR_Eukaryotes SAR_Eukaryotes 276 7e-70   NTclustered gi|573007522|gb|HQ643389.2| 214887 g7592 i0 98.71 95.5512820512821 155 2 99 0 1 155 3277 3431 Phytopythium montanum voucher CBS111349 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14906 276 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium montanum
4262339 4262339 PRJNA438687_S_NODE_5204_length_194_cov_4.320755_g5114_i0 PRJNA438687 5204 194 4.320755 8.3822647 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 195 2.6299999999999997e-45   NTclustered gi|325194632|emb|FR825445.1| 890382 g5114 i0 84.694 72.5515463917526 196 28 100 2 1 194 404 599 Albugo laibachii Nc14, genomic contig CONTIG_2284_NC14_v4_911_15847 blastn 14075 195 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
4919363 4919363 PRJNA438687_S_NODE_5904_length_181_cov_4.226027_g5814_i0 PRJNA438687 5904 181 4.226027 7.64910887 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 241 3.06e-59   NTclustered gi|2248513440|ref|NC_063805.1| 4781 g5814 i0 90.659 104.381215469613 182 15 100 2 1 181 2455 2275 Plasmopara halstedii isolate 710 mitochondrion, complete genome blastn 18893 241 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
4919389 4919389 PRJNA438687_S_NODE_7064_length_164_cov_1.131783_g6974_i0 PRJNA438687 7064 164 1.131783 1.85612412 Globisporangium 1448052 SAR_Eukaryotes SAR_Eukaryotes 292 7.41e-75   NTclustered gi|307939811|gb|HM441488.1| 179533 g6974 i0 100 96.3414634146341 158 0 96 0 1 158 257 414 Uncultured oomycete clone o8-Clo-13 large subunit ribosomal RNA gene, partial sequence blastn 15800 292 1 Eukaryota Sar   Oomycota         uncultured Oomycota
5539028 5539028 PRJNA438687_S_NODE_5105_length_196_cov_3.633540_g5015_i0 PRJNA438687 5105 196 3.63354 7.1217384 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 239 1.21e-58   NTclustered gi|2440150|emb|X75631.1| 4788 g5015 i0 89.175 94.1530612244898 194 18 98 3 1 193 2714 2905 P.megasperma gene for 28S ribosomal RNA blastn 18454 239 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
8744214 8744214 PRJNA438687_S_NODE_667_length_423_cov_67.463918_g578_i0 PRJNA438687 667 423 67.463918 285.37237314 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 141 8.45e-29   NTclustered gi|325194684|emb|FR825494.1| 890382 g578 i0 80.319 11.0898345153664 188 36 44 1 237 423 218 31 Albugo laibachii Nc14, genomic contig CONTIG_2365_NC14_v4_847_33331 blastn 4691 141 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
10019289 10019289 PRJNA438687_S_NODE_2048_length_303_cov_13.794776_g1958_i0 PRJNA438687 2048 303 13.794776 41.79817128 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 544 3.82e-150   NTclustered gi|189084007|gb|BT031523.1| 4784 g1958 i0 99.01 99.8085808580858 303 3 100 0 1 303 1852 2154 Phytophthora capsici clone CBOT29-E20 mRNA sequence blastn 30242 549 0.990892531876138 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
11913984 11913984 PRJNA438687_S_NODE_110_length_666_cov_21.337559_g72_i0 PRJNA438687 110 666 21.337559 142.10814294 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 819 0   NTclustered gi|90655144|gb|DQ361265.1| 907947 g72 i0 95.192 78.2342342342342 520 22 78 3 1 518 27 545 Pythium vexans large subunit ribosomal RNA gene, partial sequence blastn 52104 819 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
11913985 11913985 PRJNA438687_S_NODE_1110_length_366_cov_4.471299_g1020_i0 PRJNA438687 1110 366 4.471299 16.36495434 Phytophthora megasperma 4788 SAR_Eukaryotes SAR_Eukaryotes 379 1.3999999999999995e-100   NTclustered gi|2440150|emb|X75631.1| 4788 g1020 i0 87.021 69.7568306010929 339 40 92 4 1 337 3654 3318 P.megasperma gene for 28S ribosomal RNA blastn 25531 379 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
12570082 12570082 PRJNA438687_S_NODE_6390_length_173_cov_6.405797_g6300_i0 PRJNA438687 6390 173 6.405797 11.08202881 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 254 3.71e-63   NTclustered gi|90655129|gb|DQ361250.1| 53983 g6300 i0 93.064 100.011560693642 173 12 100 0 1 173 572 744 Phytophthora cambivora large subunit ribosomal RNA gene, partial sequence blastn 17302 254 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cambivora
13188986 13188986 PRJNA438687_S_NODE_3791_length_228_cov_12.321244_g3701_i0 PRJNA438687 3791 228 12.321244 28.09243632 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 409 1.0500000000000001e-109   NTclustered gi|403181325|gb|JN635247.1| 4795 g3701 i0 99.119 99.8421052631579 227 2 99 0 2 228 324 98 Phytophthora megakarya isolate WPC1664B492 18S ribosomal RNA gene, partial sequence blastn 22764 409 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
15737924 15737924 PRJNA438687_S_NODE_213_length_590_cov_21.345946_g72_i1 PRJNA438687 213 590 21.345946 125.9410814 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 701 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g72 i1 95.26 73.1915254237288 443 19 75 2 149 590 514 73 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 43183 701 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
16393745 16393745 PRJNA438687_S_NODE_353_length_511_cov_29.514706_g275_i0 PRJNA438687 353 511 29.514706 150.82014766 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 773 0   NTclustered gi|338798140|gb|HQ665201.1| 4788 g275 i0 93.945 100.20156555773 512 29 100 2 1 511 787 277 Phytophthora megasperma isolate CBS 306.36 28S large subunit ribosomal RNA gene, partial sequence blastn 51203 773 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
17012715 17012715 PRJNA438687_S_NODE_8014_length_152_cov_2.786325_g7924_i0 PRJNA438687 8014 152 2.786325 4.235214 Phytopythium montanum 214887 SAR_Eukaryotes SAR_Eukaryotes 268 1.13e-67   NTclustered gi|573007522|gb|HQ643389.2| 214887 g7924 i0 98.684 56.5131578947368 152 1 100 1 1 152 3089 3239 Phytopythium montanum voucher CBS111349 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8590 268 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium montanum
17668874 17668874 PRJNA438687_S_NODE_4254_length_215_cov_4.322222_g4164_i0 PRJNA438687 4254 215 4.322222 9.2927773 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 281 2.22e-71   NTclustered gi|2703611740|gb|PP531597.1| 162098 g4164 i0 90.61 96.3023255813954 213 19 99 1 4 215 366 154 Peronospora myosotidis voucher GLM-F73872 large subunit ribosomal RNA gene, partial sequence blastn 20705 281 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora myosotidis
17668885 17668885 PRJNA438687_S_NODE_4874_length_201_cov_15.012048_g4784_i0 PRJNA438687 4874 201 15.012048 30.17421648 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 364 1.98e-96   NTclustered gi|1821233704|gb|MT193308.1| 4798 g4784 i0 99.502 100.009950248756 201 0 99 1 1 200 1432 1632 Pythium hydnosporum isolate JZB3410002 small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 20102 364 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium hydnosporum
18286884 18286884 PRJNA438687_S_NODE_1075_length_370_cov_43.191045_g985_i0 PRJNA438687 1075 370 43.191045 159.8068665 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 634 2.75e-177   NTclustered gi|307940231|gb|HM441908.1| 179533 g985 i0 97.568 100.567567567568 370 9 100 0 1 370 133 502 Uncultured oomycete clone s8-Clo-30 large subunit ribosomal RNA gene, partial sequence blastn 37210 634 1 Eukaryota Sar   Oomycota         uncultured Oomycota
18286918 18286918 PRJNA438687_S_NODE_2475_length_281_cov_6.325203_g2385_i0 PRJNA438687 2475 281 6.325203 17.77382043 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 278 3.9300000000000005e-70   NTclustered gi|325194423|emb|FR825253.1| 890382 g2385 i0 84.669 48.1138790035587 287 34 100 10 1 281 1177 895 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 13520 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18942642 18942642 PRJNA438687_S_NODE_4715_length_204_cov_11.769231_g4625_i0 PRJNA438687 4715 204 11.769231 24.00923124 Pythium 4797 SAR_Eukaryotes SAR_Eukaryotes 366 5.599999999999998e-97   NTclustered gi|338798115|gb|HQ665176.1| 82941 g4625 i0 99.02 100.073529411765 204 2 100 0 1 204 782 985 Pythium myriotylum isolate CBS 254.70 28S large subunit ribosomal RNA gene, partial sequence blastn 20415 366 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium myriotylum
18942643 18942643 PRJNA438687_S_NODE_4815_length_202_cov_26.017964_g4725_i0 PRJNA438687 4815 202 26.017964 52.55628728 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 350 5.57e-92   NTclustered gi|1238675774|gb|MF783088.1| 4784 g4725 i0 98.01 99.5049504950495 201 4 99 0 2 202 1621 1421 Phytophthora capsici isolate CACAO small subunit ribosomal RNA gene, partial sequence blastn 20100 350 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora capsici
18942674 18942674 PRJNA438687_S_NODE_635_length_428_cov_68.493639_g547_i0 PRJNA438687 635 428 68.493639 293.15277492 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 617 3.25e-172   NTclustered gi|2440150|emb|X75631.1| 4788 g547 i0 92.791 97.2827102803738 430 26 99 4 1 426 3123 2695 P.megasperma gene for 28S ribosomal RNA blastn 41637 623 0.990369181380417 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megasperma
20217354 20217354 PRJNA438687_S_NODE_1476_length_335_cov_8.733333_g1386_i0 PRJNA438687 1476 335 8.733333 29.25666555 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 431 3.469999999999999e-116   NTclustered gi|403181314|gb|JN635236.1| 129359 g1386 i0 89.796 102.191044776119 343 26 100 7 1 335 956 615 Phytophthora porri isolate WPC10728A880 18S ribosomal RNA gene, partial sequence blastn 34234 431 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora porri
23387447 23387447 PRJNA438687_S_NODE_1419_length_339_cov_10.299342_g1329_i0 PRJNA438687 1419 339 10.299342 34.91476938 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 459 1.6099999999999996e-124   NTclustered gi|33520250|gb|AY273995.1| 92964 g1329 i0 91.691 97.8230088495575 337 19 99 6 4 339 782 454 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 33162 459 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
24661566 24661566 PRJNA438687_S_NODE_400_length_489_cov_19.762115_g72_i2 PRJNA438687 400 489 19.762115 96.63674235 Pythium monospermum 92964 SAR_Eukaryotes SAR_Eukaryotes 774 0   NTclustered gi|33520250|gb|AY273995.1| 92964 g72 i2 95.306 97.5869120654397 490 20 100 3 1 489 27 514 Pythium monospermum large subunit ribosomal RNA gene, partial sequence blastn 47720 774 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium monospermum
24661575 24661575 PRJNA438687_S_NODE_4380_length_212_cov_13.423729_g4290_i0 PRJNA438687 4380 212 13.423729 28.45830548 Phytophthora clandestina 89334 SAR_Eukaryotes SAR_Eukaryotes 357 3.53e-94   NTclustered gi|156986557|gb|EU079871.1| 89334 g4290 i0 97.156 99.5283018867924 211 6 99 0 2 212 1010 800 Phytophthora clandestina isolate PD_00134(P3942) 28S ribosomal RNA gene, partial sequence blastn 21100 357 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora clandestina
25317399 25317399 PRJNA438687_S_NODE_5280_length_192_cov_28.146497_g5190_i0 PRJNA438687 5280 192 28.146497 54.04127424 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 285 1.5e-72   NTclustered gi|325194423|emb|FR825253.1| 890382 g5190 i0 93.75 60.90625 192 9 100 3 1 192 621 433 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 11694 285 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
28686874 28686874 PRJNA438687_S_NODE_8007_length_152_cov_3.923077_g7917_i0 PRJNA438687 8007 152 3.923077 5.96307704 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 42 0.00778   NR KAE8917126.1 53985 g7917 i0 56.5 0.907894736842105 46 19 90.8 1 10 147 10 54 KAE8917126.1 hypothetical protein PF009_g32553 [Phytophthora fragariae] diamond 138 42 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;