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contig_metadata

27 rows where bioproject = "PRJNA438687", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 27 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 27 ✖

bioproject 1

  • PRJNA438687 · 27 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1710170 1710170 PRJNA438687_S_NODE_382_length_497_cov_19.660173_g303_i0 PRJNA438687 382 497 19.660173 97.71105981 Acrostichus floridensis 1936243 Nematoda Nematoda 422 3.21e-113   NTclustered gi|1375380822|dbj|LC374587.1| 1936243 g303 i0 90.881 50.3822937625755 318 24 64 5 1 316 2744 2430 Acrostichus floridensis NKZ366 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 25040 422 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus floridensis
2985954 2985954 PRJNA438687_S_NODE_2323_length_290_cov_3.850980_g2233_i0 PRJNA438687 2323 290 3.85098 11.167842 Basiria sp. SAN-2005 345476 Nematoda Nematoda 363 1.09e-95   NTclustered gi|76560642|gb|DQ145667.1| 345476 g2233 i0 89.42 75.4206896551724 293 23 98 2 6 290 1214 922 Basiria sp. SAN-2005 28S ribosomal RNA gene, partial sequence blastn 21872 363 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Basiria Basiria sp. SAN-2005
2985960 2985960 PRJNA438687_S_NODE_2463_length_282_cov_18.182186_g2373_i0 PRJNA438687 2463 282 18.182186 51.27376452 Tylenchus arcuatus 492086 Nematoda Nematoda 521 1.6499999999999996e-143   NTclustered gi|675269696|gb|KJ869322.1| 492086 g2373 i0 100 100.053191489362 282 0 100 0 1 282 580 861 Tylenchus arcuatus strain TyleArc2Z 18S ribosomal RNA gene, partial sequence blastn 28215 521 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Tylenchus Tylenchus arcuatus
2985964 2985964 PRJNA438687_S_NODE_2683_length_272_cov_19.476793_g2593_i0 PRJNA438687 2683 272 19.476793 52.97687696 Zeldia punctata 49351 Nematoda Nematoda 244 3.8399999999999996e-60   NTclustered gi|158821924|gb|EU195988.1| 49351 g2593 i0 86.087 11.5073529411765 230 29 84 3 1 229 3204 3431 Zeldia punctata strain PDL3 28S ribosomal RNA gene, partial sequence blastn 3130 244 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Zeldia Zeldia punctata
4262301 4262301 PRJNA438687_S_NODE_3664_length_232_cov_14.091371_g3574_i0 PRJNA438687 3664 232 14.091371 32.69198072 Tylenchus arcuatus 492086 Nematoda Nematoda 429 8.2e-116   NTclustered gi|675269678|gb|KJ869304.1| 492086 g3574 i0 100 99.5603448275862 232 0 100 0 1 232 89 320 Tylenchus arcuatus strain TyleArc1 18S ribosomal RNA gene, partial sequence blastn 23098 429 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Tylenchus Tylenchus arcuatus
4262331 4262331 PRJNA438687_S_NODE_4824_length_202_cov_13.077844_g4734_i0 PRJNA438687 4824 202 13.077844 26.41724488 Acrostichus sp. 5 NK-2020 2719886 Nematoda Nematoda 335 1.5599999999999993e-87   NTclustered gi|1825979587|dbj|LC530745.1| 2719886 g4734 i0 97.015 99.2623762376238 201 3 98 2 1 198 1362 1562 Acrostichus sp. 5 NK-2020 NKZ360 gene for 18S ribosomal RNA, partial sequence blastn 20051 335 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. 5 NK-2020
6813123 6813123 PRJNA438687_S_NODE_6306_length_174_cov_45.014388_g6216_i0 PRJNA438687 6306 174 45.014388 78.32503512 Brugia environmental sample 1260555 Nematoda Nematoda 267 4.7999999999999993e-67   NTclustered gi|511488175|gb|JX898625.1| 1260555 g6216 i0 96.855 51.6034482758621 159 5 91 0 1 159 422 264 Brugia environmental sample clone BME_S02-11 internal transcribed spacer 1 and 5.8S ribosomal RNA gene, partial sequence blastn 8979 267 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia environmental sample
6813161 6813161 PRJNA438687_S_NODE_886_length_390_cov_3.777465_g797_i0 PRJNA438687 886 390 3.777465 14.7321135 Rubzovinema sp. EIK-2013 1400286 Nematoda Nematoda 302 3.3500000000000006e-77   NTclustered gi|543891909|gb|KF155282.1| 1400286 g797 i0 89.583 61.9153846153846 240 22 61 3 154 390 4265 4504 Rubzovinema sp. EIK-2013 isolate A.r. 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24147 302 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neotylenchidae Rubzovinema Rubzovinema sp. EIK-2013
8088576 8088576 PRJNA438687_S_NODE_6867_length_166_cov_3.083969_g6777_i0 PRJNA438687 6867 166 3.083969 5.11938854 Paracanthonchus caecus 73922 Nematoda Nematoda 108 2.93e-19   NTclustered gi|2130729776|gb|OL416396.1| 73922 g6777 i0 82.031 50.289156626506 128 21 77 2 1 127 2782 2908 Paracanthonchus caecus isolate Pc-OVN-2021 large subunit ribosomal RNA gene, partial sequence blastn 8348 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Chromadorida Cyatholaimidae Paracanthonchus Paracanthonchus caecus
8088596 8088596 PRJNA438687_S_NODE_8107_length_151_cov_2.793103_g8017_i0 PRJNA438687 8107 151 2.793103 4.21758553 Rhabditis terricola 446305 Nematoda Nematoda 254 3.15e-63   NTclustered gi|2302486361|gb|OP434523.1| 446305 g8017 i0 100 7.45033112582781 137 0 91 0 15 151 195 59 Rhabditis terricola strain XJ-45 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1125 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditis Rhabditis terricola
8744173 8744173 PRJNA438687_S_NODE_4987_length_199_cov_3.298780_g4897_i0 PRJNA438687 4987 199 3.29878 6.5645722 Ironus 211205 Nematoda Nematoda 134 6e-27   NTclustered gi|68271495|gb|DQ086676.1| 554024 g4897 i0 86.179 62.7587939698492 123 17 62 0 1 123 297 175 Uncultured nematode isolate NEMATD17 large subunit ribosomal RNA gene, partial sequence blastn 12489 134 1 Eukaryota Opisthokonta Metazoa Nematoda         Nematoda environmental sample
10019363 10019363 PRJNA438687_S_NODE_5788_length_183_cov_13.560811_g5698_i0 PRJNA438687 5788 183 13.560811 24.81628413 Tylenchidae 114893 Nematoda Nematoda 335 1.3799999999999996e-87   NTclustered gi|164504672|gb|EU306348.1| 492086 g5698 i0 100 98.9071038251366 181 0 99 0 1 181 1425 1605 Tylenchus arcuatus isolate wb8 18S ribosomal RNA gene, partial sequence blastn 18100 335 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Tylenchus Tylenchus arcuatus
11294363 11294363 PRJNA438687_S_NODE_6469_length_172_cov_1.598540_g6379_i0 PRJNA438687 6469 172 1.59854 2.7494888 Metazoa 33208 Nematoda Nematoda 132 1.8e-26   NTclustered gi|2437461996|gb|ON496988.1| 31243 g6379 i0 86.555 50.5 119 16 69 0 3 121 4221 4103 Globodera rostochiensis isolate Ro1-5 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 8686 132 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
11294398 11294398 PRJNA438687_S_NODE_8089_length_151_cov_23.913793_g7999_i0 PRJNA438687 8089 151 23.913793 36.10982743 Tylenchus 211181 Nematoda Nematoda 274 2.42e-69   NTclustered gi|1999102901|gb|MW716338.1| 492086 g7999 i0 100 97.2847682119205 148 0 98 0 4 151 1633 1486 Tylenchus arcuatus isolate fafu21 small subunit ribosomal RNA gene, partial sequence blastn 14690 274 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Tylenchus Tylenchus arcuatus
12569980 12569980 PRJNA438687_S_NODE_150_length_628_cov_14.251265_g98_i0 PRJNA438687 150 628 14.251265 89.4979442 Acrostichus 479149 Nematoda Nematoda 641 2.91e-179   NTclustered gi|1825979586|dbj|LC530744.1| 2719885 g98 i0 85.127 78.6751592356688 632 89 100 5 1 628 643 13 Acrostichus sp. 4 NK-2020 NKZ335 gene for 28S ribosomal RNA, partial sequence blastn 49408 641 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. 4 NK-2020
13189035 13189035 PRJNA438687_S_NODE_631_length_429_cov_26.857868_g543_i0 PRJNA438687 631 429 26.857868 115.22025372 Acrostichus sp. RS5083 669107 Nematoda Nematoda 623 6.989999999999999e-174   NTclustered gi|410992296|gb|JX163971.1| 669107 g543 i0 92.824 102.307692307692 432 27 100 4 1 429 1826 1396 Acrostichus sp. RS5083 28S ribosomal RNA gene, partial sequence blastn 43890 623 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. RS5083
14463947 14463947 PRJNA438687_S_NODE_1972_length_307_cov_20.727941_g1882_i0 PRJNA438687 1972 307 20.727941 63.63477887 Acrostichus sp. RS5083 669107 Nematoda Nematoda 390 5.34e-104   NTclustered gi|410992296|gb|JX163971.1| 669107 g1882 i0 89.61 90.7752442996743 308 30 99 2 1 306 1815 2122 Acrostichus sp. RS5083 28S ribosomal RNA gene, partial sequence blastn 27868 390 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. RS5083
15118947 15118947 PRJNA438687_S_NODE_2972_length_259_cov_5.312500_g2882_i0 PRJNA438687 2972 259 5.3125 13.759375 Rhabditida 6236 Nematoda Nematoda 368 2.06e-97   NTclustered gi|2452040176|gb|OQ586465.1| 45937 g2882 i0 93.2 89.6949806949807 250 17 97 0 1 250 104 353 Pratylenchus coffeae isolate DD-1 large subunit ribosomal RNA gene, partial sequence blastn 23231 368 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus coffeae
16393835 16393835 PRJNA438687_S_NODE_7933_length_153_cov_2.711864_g7843_i0 PRJNA438687 7933 153 2.711864 4.14915192 Rhabditida 6236 Nematoda Nematoda 145 2.0099999999999997e-30   NTclustered gi|76560689|gb|DQ145714.1| 345512 g7843 i0 84.516 38.4117647058824 155 14 100 9 1 153 283 429 Aphelenchus sp. SAN-2005 28S ribosomal RNA gene, partial sequence blastn 5877 145 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchidae Aphelenchus Aphelenchus sp. SAN-2005
17012682 17012682 PRJNA438687_S_NODE_6634_length_169_cov_35.686567_g6544_i0 PRJNA438687 6634 169 35.686567 60.31029823 Acrostichus floridensis 1936243 Nematoda Nematoda 252 1.3e-62   NTclustered gi|1375380822|dbj|LC374587.1| 1936243 g6544 i0 95.031 79.8520710059172 161 6 94 1 1 159 1583 1743 Acrostichus floridensis NKZ366 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 13495 252 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus floridensis
17668852 17668852 PRJNA438687_S_NODE_2994_length_258_cov_15.937220_g2904_i0 PRJNA438687 2994 258 15.93722 41.1180276 Diplogasteridae 50861 Nematoda Nematoda 346 9.619999999999999e-91   NTclustered gi|158821919|gb|EU195983.1| 49349 g2904 i0 90.769 97.9031007751938 260 22 100 2 1 258 2516 2775 Aduncospiculum halicti strain JB120 28S ribosomal RNA gene, partial sequence blastn 25259 346 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Aduncospiculum Aduncospiculum halicti
17668870 17668870 PRJNA438687_S_NODE_3974_length_223_cov_10.510638_g3884_i0 PRJNA438687 3974 223 10.510638 23.43872274 Pseudacrobeles 114152 Nematoda Nematoda 254 5.06e-63   NTclustered gi|76560677|gb|DQ145702.1| 345506 g3884 i0 87.556 100.829596412556 225 20 99 7 1 221 1370 1590 Pseudacrobeles sp. JB-85 28S ribosomal RNA gene, partial sequence blastn 22485 254 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Cephalobidae Pseudacrobeles Pseudacrobeles sp. JB-85
19561300 19561300 PRJNA438687_S_NODE_996_length_379_cov_25.808140_g907_i0 PRJNA438687 996 379 25.80814 97.8128506 Acrostichus floridensis 1936243 Nematoda Nematoda 556 6.28e-154   NTclustered gi|1375380822|dbj|LC374587.1| 1936243 g907 i0 95.942 81.4485488126649 345 11 90 3 37 378 1 345 Acrostichus floridensis NKZ366 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence blastn 30869 556 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus floridensis
22768184 22768184 PRJNA438687_S_NODE_7978_length_153_cov_1.245763_g7888_i0 PRJNA438687 7978 153 1.245763 1.90601739 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 52.8 0.013   NTclustered gi|1988425442|gb|MW627498.1| 6306 g7888 i0 100 0.588235294117647 28 0 18 0 1 28 249 222 Meloidogyne incognita isolate MC01 large subunit ribosomal RNA gene, partial sequence blastn 90 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne incognita
24661617 24661617 PRJNA438687_S_NODE_7160_length_162_cov_10.464567_g7070_i0 PRJNA438687 7160 162 10.464567 16.95259854 Acrostichus sp. RS5083 669107 Nematoda Nematoda 228 2.0899999999999995e-55   NTclustered gi|410992296|gb|JX163971.1| 669107 g7070 i0 92.025 93.3765432098765 163 12 100 1 1 162 1218 1380 Acrostichus sp. RS5083 28S ribosomal RNA gene, partial sequence blastn 15127 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Acrostichus Acrostichus sp. RS5083
25317375 25317375 PRJNA438687_S_NODE_3860_length_226_cov_8.764398_g3770_i0 PRJNA438687 3860 226 8.764398 19.80753948 Filenchus 290120 Nematoda Nematoda 359 1.06e-94   NTclustered gi|384482668|gb|JQ005012.1| 1166535 g3770 i0 95.575 100.561946902655 226 7 100 3 1 226 620 398 Filenchus sp. 1 TJP-2012 isolate 11T05J09 large subunit ribosomal RNA gene, partial sequence blastn 22727 359 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylenchidae Filenchus Filenchus sp. 1 TJP-2012
25317420 25317420 PRJNA438687_S_NODE_640_length_427_cov_59.428571_g552_i0 PRJNA438687 640 427 59.428571 253.75999817 Diplogasteridae 50861 Nematoda Nematoda 431 4.53e-116   NTclustered gi|158821919|gb|EU195983.1| 49349 g552 i0 88.187 67.8571428571429 364 40 85 3 1 362 3114 3476 Aduncospiculum halicti strain JB120 28S ribosomal RNA gene, partial sequence blastn 28975 431 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Aduncospiculum Aduncospiculum halicti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;