RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA438687", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA438687 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11914046 11914046 PRJNA438687_S_NODE_3870_length_226_cov_2.460733_g3780_i0 PRJNA438687 3870 226 2.460733 5.56125658 Chlorobiota bacterium 2268192 Bacteria Bacteria 392 1.04e-104   NTclustered gi|1958119998|gb|CP065014.1| 2268192 g3780 i0 98.643 35.4557522123894 221 3 98 0 1 221 282673 282453 MAG: Chlorobiota bacterium isolate Ribe_18-Q3-R11-54_MAXAC.096_cln chromosome, complete genome blastn 8013 392 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
22768133 22768133 PRJNA438687_S_NODE_5758_length_184_cov_1.127517_g5668_i0 PRJNA438687 5758 184 1.127517 2.07463128 Chlorobium 1091 Bacteria Bacteria 147 7.0000000000000015e-31   NTclustered gi|470483299|ref|NR_076584.1| 1092 g5668 i0 81.675 28.9510869565217 191 22 97 8 4 182 1517 1328 Chlorobium limicola strain DSM 245 23S ribosomal RNA gene, complete sequence blastn 5327 147 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium limicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;