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contig_metadata

26 rows where bioproject = "PRJNA438687", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 26 ✖

tax_clade 1

  • Discoba · 26 ✖

bioproject 1

  • PRJNA438687 · 26 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2986032 2986032 PRJNA438687_S_NODE_603_length_434_cov_11.884712_g515_i0 PRJNA438687 603 434 11.884712 51.57965008 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 52.8 0.042   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g515 i0 100 0.193548387096774 28 0 6 0 404 431 4534 4561 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 84 52.8 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
2986044 2986044 PRJNA438687_S_NODE_6423_length_173_cov_1.043478_g6333_i0 PRJNA438687 6423 173 1.043478 1.80521694 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 246 6.2099999999999995e-61   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g6333 i0 92.486 1 173 11 99 2 1 172 4068 4239 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 173 246 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
2986047 2986047 PRJNA438687_S_NODE_6583_length_170_cov_2.696296_g6493_i0 PRJNA438687 6583 170 2.696296 4.5837032 Naegleria jadini 51636 Heterolobosea other_Eukaryota 259 7.8e-65   NTclustered gi|2438257170|gb|OP997288.1| 51636 g6493 i0 94.611 11.8058823529412 167 9 98 0 4 170 4631 4465 Naegleria jadini strain ITMAP400 plasmid CERE, complete sequence blastn 2007 259 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria jadini
3642128 3642128 PRJNA438687_S_NODE_2623_length_275_cov_4.250000_g2533_i0 PRJNA438687 2623 275 4.25 11.6875 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 508 1.2499999999999999e-139   NTclustered gi|89148135|gb|DQ388520.1| 373144 g2533 i0 100 30.9345454545455 275 0 100 0 1 275 230 504 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 8507 508 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
3642166 3642166 PRJNA438687_S_NODE_4683_length_205_cov_2.611765_g4593_i0 PRJNA438687 4683 205 2.611765 5.35411825 Naegleria 5761 Heterolobosea other_Eukaryota 348 2.0400000000000002e-91   NTclustered gi|2801876958|gb|PQ308408.1| 37103 g4593 i0 98 98.8634146341463 200 4 98 0 6 205 175 374 Naegleria sp. isolate N10 small subunit ribosomal RNA gene, partial sequence blastn 20267 348 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
3642208 3642208 PRJNA438687_S_NODE_6863_length_166_cov_3.458015_g6773_i0 PRJNA438687 6863 166 3.458015 5.7403049 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 305 9.67e-79   NTclustered gi|89148135|gb|DQ388520.1| 373144 g6773 i0 100 24.0903614457831 165 0 99 0 2 166 208 44 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 3999 305 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
4919418 4919418 PRJNA438687_S_NODE_8204_length_150_cov_2.773913_g8114_i0 PRJNA438687 8204 150 2.773913 4.1608695000000004 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 278 1.85e-70   NTclustered gi|2618963742|gb|OR769034.1| 5762 g8114 i0 100 90.32 150 0 100 0 1 150 3123 3272 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 13548 278 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
6194188 6194188 PRJNA438687_S_NODE_2005_length_305_cov_2.725926_g1915_i0 PRJNA438687 2005 305 2.725926 8.3140743 Naegleria 5761 Heterolobosea other_Eukaryota 446 1.12e-120   NTclustered gi|2031946985|emb|OD958550.1| 5763 g1915 i0 93.092 10.3311475409836 304 21 99 0 1 304 2825 2522 Naegleria fowleri Karachi_NF001 strain blastn 3151 446 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
6194263 6194263 PRJNA438687_S_NODE_6105_length_177_cov_12.626761_g6015_i0 PRJNA438687 6105 177 12.626761 22.34936697 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 276 8.15e-70   NTclustered gi|89148135|gb|DQ388520.1| 373144 g6015 i0 96.429 96.6497175141243 168 5 94 1 11 177 1201 1368 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 17107 276 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
8088502 8088502 PRJNA438687_S_NODE_3267_length_247_cov_2.542453_g3177_i0 PRJNA438687 3267 247 2.542453 6.27985891 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 424 4.1099999999999996e-114   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g3177 i0 97.571 59.2429149797571 247 6 100 0 1 247 2801 3047 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14633 424 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
9363304 9363304 PRJNA438687_S_NODE_3388_length_242_cov_2.212560_g3298_i0 PRJNA438687 3388 242 2.21256 5.3543952 Naegleria clarki 36333 Heterolobosea other_Eukaryota 326 1.16e-84   NTclustered gi|2651357780|gb|PP174296.1| 36333 g3298 i0 91.322 46.5909090909091 242 15 100 6 1 242 3879 4114 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11275 326 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki
12570034 12570034 PRJNA438687_S_NODE_430_length_480_cov_3.750562_g349_i0 PRJNA438687 430 480 3.750562 18.0026976 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 756 0   NTclustered gi|89148135|gb|DQ388520.1| 373144 g349 i0 98.376 56.4708333333333 431 5 90 2 50 480 1279 851 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 27106 761 0.993429697766097 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA
16393795 16393795 PRJNA438687_S_NODE_6273_length_175_cov_3.078571_g6183_i0 PRJNA438687 6273 175 3.078571 5.38749925 Naegleria 5761 Heterolobosea other_Eukaryota 318 1.32e-82   NTclustered gi|2618963742|gb|OR769034.1| 5762 g6183 i0 99.429 10.9942857142857 175 1 100 0 1 175 5247 5073 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 1924 318 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
17012644 17012644 PRJNA438687_S_NODE_4294_length_214_cov_3.296089_g4204_i0 PRJNA438687 4294 214 3.296089 7.05363046 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 377 2.74e-100   NTclustered gi|2031946985|emb|OD958550.1| 5763 g4204 i0 98.592 47.9299065420561 213 3 99 0 1 213 3454 3242 Naegleria fowleri Karachi_NF001 strain blastn 10257 377 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
18286935 18286935 PRJNA438687_S_NODE_3035_length_257_cov_3.396396_g2945_i0 PRJNA438687 3035 257 3.396396 8.72873772 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 425 1.2e-114   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g2945 i0 96.498 3 257 9 100 0 1 257 3705 3961 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 771 425 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
18286966 18286966 PRJNA438687_S_NODE_4435_length_211_cov_1.772727_g4345_i0 PRJNA438687 4435 211 1.772727 3.74045397 Naegleria sp. 37103 Heterolobosea other_Eukaryota 346 7.59e-91   NTclustered gi|2651357798|gb|PP174311.1| 37103 g4345 i0 96.209 14.8862559241706 211 8 100 0 1 211 3071 3281 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3141 346 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
18286968 18286968 PRJNA438687_S_NODE_4515_length_209_cov_1.764368_g4425_i0 PRJNA438687 4515 209 1.764368 3.68752912 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 305 1.27e-78   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g4425 i0 93.269 14.0430622009569 208 13 99 1 3 209 4319 4526 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2935 305 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
19561171 19561171 PRJNA438687_S_NODE_1816_length_316_cov_3.615658_g1726_i0 PRJNA438687 1816 316 3.615658 11.42547928 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 562 1.11e-155   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g1726 i0 98.734 47.3449367088608 316 4 100 0 1 316 2916 3231 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14961 562 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
20217368 20217368 PRJNA438687_S_NODE_256_length_565_cov_4.333962_g186_i0 PRJNA438687 256 565 4.333962 24.4868853 Naegleria 5761 Heterolobosea other_Eukaryota 1007 0   NTclustered gi|32479131|gb|AY321362.1| 51634 g186 i0 98.936 97.2353982300885 564 5 99 1 2 565 1857 1295 Naegleria australiensis isolate TT 18S ribosomal RNA gene, partial sequence blastn 54938 1007 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria australiensis
20836912 20836912 PRJNA438687_S_NODE_5297_length_192_cov_2.292994_g5207_i0 PRJNA438687 5297 192 2.292994 4.40254848 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 139 1.23e-28   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g5207 i0 90.566 33.53125 106 8 55 2 88 192 3972 3868 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 6438 139 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
21492999 21492999 PRJNA438687_S_NODE_2117_length_300_cov_6.403774_g2027_i0 PRJNA438687 2117 300 6.403774 19.211322 Naegleria 5761 Heterolobosea other_Eukaryota 545 1.0499999999999999e-150   NTclustered gi|2289385106|gb|OP297026.1| 5762 g2027 i0 99.664 99.4633333333333 298 1 99 0 1 298 626 329 Naegleria gruberi strain 3HKMJS1 small subunit ribosomal RNA gene, partial sequence blastn 29839 549 0.992714025500911 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
21493033 21493033 PRJNA438687_S_NODE_4177_length_217_cov_3.291209_g4087_i0 PRJNA438687 4177 217 3.291209 7.14192353 Naegleria 5761 Heterolobosea other_Eukaryota 401 1.6499999999999994e-107   NTclustered gi|110766914|gb|DQ768722.1| 395911 g4087 i0 100 99.9539170506912 217 0 100 0 1 217 440 224 Naegleria sp. RR11Z/I small subunit ribosomal RNA gene, partial sequence blastn 21690 401 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp. RR11Z/I
22111968 22111968 PRJNA438687_S_NODE_4838_length_202_cov_3.263473_g4748_i0 PRJNA438687 4838 202 3.263473 6.59221546 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 329 7.25e-86   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g4748 i0 96.04 58.8019801980198 202 8 100 0 1 202 4127 4328 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11878 329 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
24043052 24043052 PRJNA438687_S_NODE_4839_length_202_cov_2.988024_g4749_i0 PRJNA438687 4839 202 2.988024 6.03580848 Naegleria 5761 Heterolobosea other_Eukaryota 374 3.3e-99   NTclustered gi|2651357798|gb|PP174311.1| 37103 g4749 i0 100 16.1188118811881 202 0 100 0 1 202 2816 3017 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3256 374 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
24661504 24661504 PRJNA438687_S_NODE_1780_length_318_cov_2.130742_g1690_i0 PRJNA438687 1780 318 2.130742 6.77575956 uncultured heterolobosean 352378 Heterolobosea other_Eukaryota 379 1.1999999999999999e-100   NTclustered gi|95115861|gb|DQ504339.1| 352378 g1690 i0 88.474 98.625786163522 321 28 99 5 1 314 1367 1049 Uncultured heterolobosean clone LC103_5EP_3 18S ribosomal RNA gene, partial sequence blastn 31363 379 1 Eukaryota Discoba   Heterolobosea         uncultured heterolobosean
25317427 25317427 PRJNA438687_S_NODE_6740_length_168_cov_2.007519_g6650_i0 PRJNA438687 6740 168 2.007519 3.37263192 Allovahlkampfia 1217108 Heterolobosea other_Eukaryota 305 9.81e-79   NTclustered gi|89148135|gb|DQ388520.1| 373144 g6650 i0 99.405 63.5952380952381 168 1 100 0 1 168 1699 1532 Heterolobosea sp. OSA 16S small subunit ribosomal RNA gene, partial sequence blastn 10684 305 1 Eukaryota Discoba   Heterolobosea         Heterolobosea sp. OSA

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;