RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA438687" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 9 ✖

bioproject 1

  • PRJNA438687 · 9 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1710197 1710197 PRJNA438687_S_NODE_5022_length_198_cov_4.018405_g4932_i0 PRJNA438687 5022 198 4.018405 7.9564419 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 355 1.17e-93   NTclustered gi|61187360|gb|AY752987.1| 41120 g4932 i0 98.99 101.459595959596 198 2 100 0 1 198 1745 1942 Apusomonas sp. CCAP1905/1 28S ribosomal RNA gene, partial sequence blastn 20089 355 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
2986073 2986073 PRJNA438687_S_NODE_8223_length_150_cov_2.043478_g8133_i0 PRJNA438687 8223 150 2.043478 3.065217 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 158 2.5199999999999998e-34   NTclustered gi|61187360|gb|AY752987.1| 41120 g8133 i0 85.906 36.8333333333333 149 19 99 2 3 150 2053 2200 Apusomonas sp. CCAP1905/1 28S ribosomal RNA gene, partial sequence blastn 5525 158 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
6813062 6813062 PRJNA438687_S_NODE_3426_length_240_cov_43.853659_g3336_i0 PRJNA438687 3426 240 43.853659 105.2487816 Apusomonas australiensis 3003317 Root_unresolved Root_unresolved 383 6.74e-102   NTclustered gi|2206682164|gb|OM966637.1| 3003317 g3336 i0 95.417 101.3625 240 11 100 0 1 240 4632 4393 Apusomonas australiensis strain PROMEX small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24327 383 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas australiensis
13188997 13188997 PRJNA438687_S_NODE_4251_length_215_cov_6.583333_g4161_i0 PRJNA438687 4251 215 6.583333 14.15416595 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 381 2.1299999999999996e-101   NTclustered gi|61187360|gb|AY752987.1| 41120 g4161 i0 98.611 101.367441860465 216 2 100 1 1 215 2486 2701 Apusomonas sp. CCAP1905/1 28S ribosomal RNA gene, partial sequence blastn 21794 381 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
15738032 15738032 PRJNA438687_S_NODE_7013_length_164_cov_5.007752_g6923_i0 PRJNA438687 7013 164 5.007752 8.21271328 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 303 3.42e-78   NTclustered gi|225216787|gb|FJ176702.1| 41120 g6923 i0 100 56.1219512195122 164 0 100 0 1 164 596 759 Apusomonas proboscidea HFCC47 28S ribosomal RNA gene, partial sequence blastn 9204 303 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
18286954 18286954 PRJNA438687_S_NODE_395_length_493_cov_10.196507_g316_i0 PRJNA438687 395 493 10.196507 50.26877951 Catacumbia lutetiensis 2925415 Root_unresolved Root_unresolved 159 2.76e-34   NTclustered gi|2206682166|gb|OM966639.1| 2925415 g316 i0 89.6 27.3204868154158 125 13 25 0 40 164 5302 5178 Catacumbia lutetiensis strain ORSAYFEB19APU2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13469 159 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Catacumbia Catacumbia lutetiensis
19561262 19561262 PRJNA438687_S_NODE_5876_length_182_cov_1.612245_g5786_i0 PRJNA438687 5876 182 1.612245 2.9342859 Amastigomonas bermudensis 172822 Root_unresolved Root_unresolved 91.6 3.28e-14   NTclustered gi|300078505|gb|GU001167.1| 172822 g5786 i0 79.699 42.3626373626374 133 20 70 6 41 167 2791 2660 Amastigomonas bermudensis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7710 91.6 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Amastigomonas Amastigomonas bermudensis
22112016 22112016 PRJNA438687_S_NODE_7658_length_156_cov_2.677686_g7568_i0 PRJNA438687 7658 156 2.677686 4.17719016 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 250 4.25e-62   NTclustered gi|2206682169|gb|OM966642.1| 41120 g7568 i0 95.513 35.5320512820513 156 7 100 0 1 156 5765 5920 Apusomonas proboscidea strain MPSANABRIA15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5543 250 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea
23387567 23387567 PRJNA438687_S_NODE_7099_length_163_cov_3.046875_g7009_i0 PRJNA438687 7099 163 3.046875 4.96640625 Apusomonas proboscidea 41120 Root_unresolved Root_unresolved 291 2.64e-74   NTclustered gi|61187360|gb|AY752987.1| 41120 g7009 i0 98.773 116.840490797546 163 2 100 0 1 163 1528 1366 Apusomonas sp. CCAP1905/1 28S ribosomal RNA gene, partial sequence blastn 19045 291 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Apusomonas Apusomonas proboscidea

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;