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contig_metadata

21 rows where bioproject = "PRJNA438687", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 21 ✖

tax_clade 1

  • Amoebozoa · 21 ✖

bioproject 1

  • PRJNA438687 · 21 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4262381 4262381 PRJNA438687_S_NODE_7704_length_156_cov_1.223140_g7614_i0 PRJNA438687 7704 156 1.22314 1.9080984 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 84.2 4.56e-12   NTclustered gi|300078497|gb|GU001159.1| 200886 g7614 i0 91.803 0.391025641025641 61 4 38 1 96 155 2657 2717 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 61 84.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
4262383 4262383 PRJNA438687_S_NODE_7844_length_154_cov_2.352941_g7754_i0 PRJNA438687 7844 154 2.352941 3.62352914 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 93.5 7.45e-15   NTclustered gi|511487963|gb|JX898537.1| 1260765 g7754 i0 84.375 0.623376623376623 96 13 62 2 56 150 152 58 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 96 93.5 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
4919403 4919403 PRJNA438687_S_NODE_764_length_407_cov_10.685484_g675_i0 PRJNA438687 764 407 10.685484 43.48991988 Polychaos 2663723 Tubulinea other_Eukaryota 368 3.42e-97   NTclustered gi|1887703455|gb|MT874850.1| 2762048 g675 i0 92.607 13.4815724815725 257 17 63 2 2 256 257 1 Polychaos centronucleolus strain DKis1.1 small subunit ribosomal RNA gene, partial sequence blastn 5487 368 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos centronucleolus
5539089 5539089 PRJNA438687_S_NODE_8205_length_150_cov_2.765217_g8115_i0 PRJNA438687 8205 150 2.765217 4.1478255 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 207 2.46e-49   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g8115 i0 93.571 0.933333333333333 140 7 93 2 12 150 4630 4492 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 140 207 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6813048 6813048 PRJNA438687_S_NODE_2726_length_270_cov_4.412766_g2636_i0 PRJNA438687 2726 270 4.412766 11.9144682 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 444 3.49e-120   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g2636 i0 96.642 48.562962962963 268 8 99 1 3 270 4435 4169 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13112 444 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
6813069 6813069 PRJNA438687_S_NODE_366_length_503_cov_5.410256_g287_i0 PRJNA438687 366 503 5.410256 27.21358768 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 599 1.3999999999999994e-166   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g287 i0 96.919 51.5387673956262 357 11 71 0 147 503 2683 2327 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25924 599 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
7469184 7469184 PRJNA438687_S_NODE_5446_length_189_cov_3.850649_g5356_i0 PRJNA438687 5446 189 3.850649 7.27772661 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 69.4 1.61e-7   NTclustered gi|300078496|gb|GU001158.1| 5778 g5356 i0 91.837 21.2592592592593 49 4 26 0 1 49 2252 2300 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4018 69.4 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8088555 8088555 PRJNA438687_S_NODE_5707_length_184_cov_25.510067_g5617_i0 PRJNA438687 5707 184 25.510067 46.93852328 Polychaos annulatum 2663724 Tubulinea other_Eukaryota 303 3.92e-78   NTclustered gi|1771808153|gb|MN633272.1| 2663724 g5617 i0 96.703 98.9836956521739 182 6 99 0 1 182 803 984 Polychaos annulatum strain Pushkin P1 small subunit ribosomal RNA gene, partial sequence blastn 18213 303 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos annulatum
10639207 10639207 PRJNA438687_S_NODE_469_length_465_cov_15.509302_g387_i0 PRJNA438687 469 465 15.509302 72.1182543 Polychaos sp. OK-2023a 3107887 Tubulinea other_Eukaryota 407 8.37e-109   NTclustered gi|2634048133|gb|OR947210.1| 3107887 g387 i0 82.773 43.6645161290323 476 62 99 9 3 463 6 476 Polychaos sp. OK-2023a small subunit ribosomal RNA gene, partial sequence blastn 20304 407 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos sp. OK-2023a
10639245 10639245 PRJNA438687_S_NODE_6809_length_167_cov_2.181818_g6719_i0 PRJNA438687 6809 167 2.181818 3.64363606 Tubulinea group 04 sp. PPD16 1215999 Tubulinea other_Eukaryota 265 1.65e-66   NTclustered gi|399764279|gb|JQ271790.1| 1215999 g6719 i0 95.238 29.3353293413174 168 7 100 1 1 167 734 901 Tubulinea group 04 sp. PPD16 18S ribosomal RNA gene, partial sequence blastn 4899 265 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. PPD16
12570102 12570102 PRJNA438687_S_NODE_6930_length_165_cov_20.069231_g6840_i0 PRJNA438687 6930 165 20.069231 33.11423115 Polychaos 2663723 Tubulinea other_Eukaryota 241 2.74e-59   NTclustered gi|1771808153|gb|MN633272.1| 2663724 g6840 i0 93.333 98.6969696969697 165 8 99 2 2 165 357 195 Polychaos annulatum strain Pushkin P1 small subunit ribosomal RNA gene, partial sequence blastn 16285 241 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos annulatum
15737904 15737904 PRJNA438687_S_NODE_1293_length_348_cov_8.961661_g1203_i0 PRJNA438687 1293 348 8.961661 31.18658028 Polychaos sp. OK-2023a 3107887 Tubulinea other_Eukaryota 344 4.86e-90   NTclustered gi|2634048133|gb|OR947210.1| 3107887 g1203 i0 91.339 48.7097701149425 254 19 87 3 97 348 1873 1621 Polychaos sp. OK-2023a small subunit ribosomal RNA gene, partial sequence blastn 16951 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos sp. OK-2023a
15738014 15738014 PRJNA438687_S_NODE_6253_length_175_cov_9.235714_g6163_i0 PRJNA438687 6253 175 9.235714 16.1624995 Polychaos sp. OK-2023a 3107887 Tubulinea other_Eukaryota 95.3 2.42e-15   NTclustered gi|2634048133|gb|OR947210.1| 3107887 g6163 i0 85.87 21.8057142857143 92 9 51 4 86 175 1536 1625 Polychaos sp. OK-2023a small subunit ribosomal RNA gene, partial sequence blastn 3816 95.3 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Polychaos Polychaos sp. OK-2023a
16393711 16393711 PRJNA438687_S_NODE_1253_length_352_cov_6.488959_g1163_i0 PRJNA438687 1253 352 6.488959 22.84113568 Arcellinida 318493 Tubulinea other_Eukaryota 628 1.2099999999999999e-175   NTclustered gi|166203599|gb|EU392157.1| 499111 g1163 i0 98.867 71.5369318181818 353 3 100 1 1 352 475 123 Heleopera rosea from Switzerland small subunit ribosomal RNA gene, partial sequence blastn 25181 628 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Heleoperidae Heleopera Heleopera rosea
18942611 18942611 PRJNA438687_S_NODE_3115_length_253_cov_14.288991_g3025_i0 PRJNA438687 3115 253 14.288991 36.15114723 Vermamoeba 1260114 Tubulinea other_Eukaryota 106 1.74e-18   NTclustered gi|300078496|gb|GU001158.1| 5778 g3025 i0 89.286 0.99604743083004 84 9 33 0 1 84 2429 2512 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 252 106 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20836943 20836943 PRJNA438687_S_NODE_6797_length_167_cov_3.113636_g6707_i0 PRJNA438687 6797 167 3.113636 5.19977212 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 302 1.2600000000000001e-77   NTclustered gi|2723225182|gb|PP732398.1| 1525729 g6707 i0 99.398 93.4431137724551 166 1 99 0 1 166 431 596 Ptolemeba bulliensis isolate P4F0 EUK small subunit ribosomal RNA gene, partial sequence blastn 15605 302 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
23387463 23387463 PRJNA438687_S_NODE_2099_length_301_cov_4.124060_g2009_i0 PRJNA438687 2099 301 4.12406 12.4134206 Copromyxa vandevyveri 1678071 Tubulinea other_Eukaryota 381 3.149999999999999e-101   NTclustered gi|861553891|gb|KP719189.1| 1678071 g2009 i0 94.071 80.3255813953488 253 12 83 3 52 301 128 380 Copromyxa vandevyveri strain A5DVDPB clone 10 small subunit ribosomal RNA gene, partial sequence blastn 24178 381 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa vandevyveri
23387467 23387467 PRJNA438687_S_NODE_2279_length_292_cov_3.214008_g2189_i0 PRJNA438687 2279 292 3.214008 9.38490336 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 387 6.53e-103   NTclustered gi|145386791|gb|EF216916.1| 136459 g2189 i0 90.941 67.9006849315068 287 26 98 0 4 290 405 119 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 19827 387 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
23387523 23387523 PRJNA438687_S_NODE_4679_length_205_cov_3.082353_g4589_i0 PRJNA438687 4679 205 3.082353 6.31882365 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 307 3.4600000000000006e-79   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g4589 i0 94.146 2.24390243902439 205 7 100 3 1 205 4004 4203 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 460 307 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
23387583 23387583 PRJNA438687_S_NODE_8099_length_151_cov_4.017241_g8009_i0 PRJNA438687 8099 151 4.017241 6.06603391 Copromyxa vandevyveri 1678071 Tubulinea other_Eukaryota 147 5.489999999999999e-31   NTclustered gi|861553891|gb|KP719189.1| 1678071 g8009 i0 85.315 2.23841059602649 143 20 95 1 6 148 916 1057 Copromyxa vandevyveri strain A5DVDPB clone 10 small subunit ribosomal RNA gene, partial sequence blastn 338 147 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa vandevyveri
24043093 24043093 PRJNA438687_S_NODE_6439_length_172_cov_10.525547_g6349_i0 PRJNA438687 6439 172 10.525547 18.10394084 Hartmannellidae 5776 Tubulinea other_Eukaryota 309 7.75e-80   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g6349 i0 99.412 99.0639534883721 170 1 99 0 2 171 1042 1211 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 17039 309 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;