RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA438572" and tax_phylum = "Candidatus Omnitrophota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA438572 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27897140 27897140 PRJNA438572_P_NODE_9685_length_329_cov_0.992188_g9566_i0 PRJNA438572 9685 329 0.992188 3.26429852 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 68.2 7.77e-12   NR MEE8317874.1 2035772 g9566 i0 45 0.729483282674772 80 44 72.9 0 3 242 61 140 MEE8317874.1 ribonuclease HI family protein [Candidatus Omnitrophota bacterium] diamond 240 68.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28528899 28528899 PRJNA438572_P_NODE_16007_length_259_cov_2.451613_g15888_i0 PRJNA438572 16007 259 2.451613 6.34967767 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 90.1 9.06e-19   NR HNV85477.1 2035772 g15888 i0 62.7 2.32818532818533 67 23 77.6 1 203 3 339 403 HNV85477.1 hydroxylamine reductase [Candidatus Omnitrophota bacterium] diamond 603 90.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;