RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA438572", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 3 ✖

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA438572 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29633411 29633411 PRJNA438572_P_NODE_24490_length_242_cov_0.923077_g24371_i0 PRJNA438572 24490 242 0.923077 2.23384634 Thermoplasmata archaeon 1906666 Archaea Archaea 62.4 2.36e-9   NR MFP4000404.1 1906666 g24371 i0 36.3 0.991735537190083 80 47 94.2 1 242 15 16 95 MFP4000404.1 enoyl-CoA hydratase/isomerase family protein [Thermoplasmata archaeon] diamond 240 62.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30644556 30644556 PRJNA438572_P_NODE_10673_length_314_cov_1.294606_g10554_i0 PRJNA438572 10673 314 1.294606 4.06506284 Methanomethylophilus sp. 2774294 Archaea Archaea 45.1 0.0116   NR MBO4502605.1 2774294 g10554 i0 36.4 1.46178343949045 55 35 52.5 0 114 278 12 66 MBO4502605.1 Mrp/NBP35 family ATP-binding protein [Methanomethylophilus sp.] diamond 459 45.1 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae Methanomethylophilus Methanomethylophilus sp.
32035853 32035853 PRJNA438572_P_NODE_5378_length_430_cov_1.184874_g5259_i0 PRJNA438572 5378 430 1.184874 5.0949582 Thermoplasmata archaeon 1906666 Archaea Archaea 44.7 0.0474   NR MCK5292578.1 1906666 g5259 i0 31.8 0.613953488372093 88 57 59.3 1 6 260 211 298 MCK5292578.1 cell division protein FtsZ [Thermoplasmata archaeon] diamond 264 44.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;