RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA438572", tax_kingdom = "Fungi" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA438572 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13844521 13844521 PRJNA438572_P_NODE_15371_length_265_cov_1.625000_g15252_i0 PRJNA438572 15371 265 1.625 4.30625 Nematocida 586132 Fungi Fungi 62.4 1.83e-9   NR XP_051347181.1 1912981 g15252 i0 47.8 6.52075471698113 69 30 78.1 1 40 246 17 79 XP_051347181.1 Ras-related protein Rab-13 [Nematocida homosporus] diamond 1728 62.8 0.993630573248408 Eukaryota Opisthokonta Fungi Microsporidia       Nematocida Nematocida homosporus
29618187 29618187 PRJNA438572_P_NODE_17390_length_252_cov_1.536313_g17271_i0 PRJNA438572 17390 252 1.536313 3.87150876 Opisthokonta 33154 Fungi Fungi 55.1 1.81e-6   NR KAI4291218.1 1923975 g17271 i0 42.1 1.42857142857143 57 33 67.9 0 81 251 375 431 KAI4291218.1 polyadenylation factor subunit 2 [Pancytospora philotis] diamond 360 55.5 0.992792792792793 Eukaryota Opisthokonta Fungi Microsporidia       Pancytospora Pancytospora philotis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;