RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

24 rows where bioproject = "PRJNA438572", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 24 ✖

tax_clade 1

  • Sar · 24 ✖

bioproject 1

  • PRJNA438572 · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1709986 1709986 PRJNA438572_P_NODE_4142_length_483_cov_1.631707_g4024_i0 PRJNA438572 4142 483 1.631707 7.88114481 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 893 0   NTclustered gi|238617602|gb|FJ973377.1| 188950 g4024 i0 100 23.1821946169772 483 0 100 0 1 483 322 804 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 11197 893 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
2985574 2985574 PRJNA438572_P_NODE_12983_length_287_cov_1.280374_g12864_i0 PRJNA438572 12983 287 1.280374 3.67467338 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 107 7.01e-25   NR MES1906893.1 1215613 g12864 i0 70.8 1.34843205574913 65 19 67.9 0 3 197 94 158 MES1906893.1 hypothetical protein [Cercozoa sp. M6MM] diamond 387 107 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
2985643 2985643 PRJNA438572_P_NODE_163_length_1727_cov_3.273881_g142_i0 PRJNA438572 163 1727 3.273881 56.53992487 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 1633 0   NTclustered gi|302026154|gb|GQ377660.1| 188950 g142 i0 99.664 72.8239722061378 893 3 52 0 496 1388 893 1 Bodomorpha minima beta-tubulin (Btub) gene, partial cds blastn 125767 1633 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
2985661 2985661 PRJNA438572_P_NODE_17583_length_252_cov_0.871508_g17464_i0 PRJNA438572 17583 252 0.871508 2.19620016 Paulinella micropora 1928728 SAR_Eukaryotes SAR_Eukaryotes 248 2.72e-61   NTclustered gi|1389527547|dbj|LC383946.1| 1928728 g17464 i0 87.156 154.519841269841 218 28 87 0 18 235 662 445 Paulinella micropora gene for polyubiquitin, complete cds blastn 38939 248 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Paulinellidae Paulinella Paulinella micropora
2985765 2985765 PRJNA438572_P_NODE_2563_length_611_cov_5.254647_g2447_i0 PRJNA438572 2563 611 5.254647 32.10589317 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 182 8.109999999999997e-55   NR AAT09077.1 227086 g2447 i0 71.2 0.613747954173486 125 36 61.4 0 582 208 1 125 AAT09077.1 transcription factor BTF3 [Bigelowiella natans] diamond 375 182 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
4261949 4261949 PRJNA438572_P_NODE_144_length_1804_cov_24.692663_g124_i0 PRJNA438572 144 1804 24.692663 445.45564052 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 695 9.319999999999995e-247   NR MES1909605.1 1215613 g124 i0 77.1 4.40853658536585 433 99 72 0 1781 483 1 433 MES1909605.1 hypothetical protein [Cercozoa sp. M6MM] diamond 7953 701 0.991440798858773 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
5538873 5538873 PRJNA438572_P_NODE_6305_length_399_cov_6.297546_g6186_i0 PRJNA438572 6305 399 6.297546 25.12720854 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 466 1.1499999999999999e-126   NTclustered gi|238617666|gb|FJ973412.1| 188950 g6186 i0 99.225 37.874686716792 258 2 65 0 1 258 258 1 Bodomorpha minima strain ATCC 50339 alpha-tubulin (atub) gene, partial cds blastn 15112 466 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
10019184 10019184 PRJNA438572_P_NODE_24688_length_240_cov_2.778443_g24569_i0 PRJNA438572 24688 240 2.778443 6.6682632 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 138 5.63e-40   NR ADK47156.1 323453 g24569 i0 90.4 0.9125 73 7 91.3 0 219 1 1 73 ADK47156.1 ribosomal protein S23a [Heteromita sp. PRA-74] diamond 219 138 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
15737491 15737491 PRJNA438572_P_NODE_10573_length_315_cov_2.185950_g10454_i0 PRJNA438572 10573 315 2.18595 6.8857425 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 274 5.78e-69   NTclustered gi|300676716|gb|GQ377714.1| 323453 g10454 i0 84.672 61.9460317460317 274 42 87 0 42 315 54 327 Heteromita sp. PRA-74 rps22a (rps22a) mRNA, complete cds blastn 19513 274 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
15737836 15737836 PRJNA438572_P_NODE_6613_length_390_cov_1.473186_g6494_i0 PRJNA438572 6613 390 1.473186 5.7454254 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 265 4.4e-66   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g6494 i0 80.157 53.3435897435897 383 53 94 22 23 390 4038 3664 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 20804 265 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
17012285 17012285 PRJNA438572_P_NODE_1654_length_744_cov_3.071535_g1550_i0 PRJNA438572 1654 744 3.071535 22.8522204 Heteromita sp. PRA-74 323453 SAR_Eukaryotes SAR_Eukaryotes 246 8.07e-80   NR ADK26622.1 323453 g1550 i0 88.5 0.524193548387097 130 15 52.4 0 25 414 1 130 ADK26622.1 rps22a [Heteromita sp. PRA-74] diamond 390 246 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita sp. PRA-74
17668721 17668721 PRJNA438572_P_NODE_2294_length_645_cov_1.202797_g2180_i0 PRJNA438572 2294 645 1.202797 7.75804065 Verrucomonas 2545269 SAR_Eukaryotes SAR_Eukaryotes 204 1.67e-47   NTclustered gi|290760488|gb|GQ144691.1| 629763 g2180 i0 82.041 23.6 245 38 38 6 221 463 1487 1247 Cercozoa sp. CC-2009e large subunit ribosomal RNA gene, partial sequence blastn 15222 204 1 Eukaryota Sar   Cercozoa Thecofilosea Ventricleftida   Verrucomonas Verrucomonas bifida
18286742 18286742 PRJNA438572_P_NODE_3215_length_549_cov_1.302521_g3097_i0 PRJNA438572 3215 549 1.302521 7.15084029 Rosculus sp. 2231160 SAR_Eukaryotes SAR_Eukaryotes 907 0   NTclustered gi|1402550473|gb|MH488759.1| 2231160 g3097 i0 96.552 14.0892531876138 551 13 100 5 1 549 579 33 Rosculus sp. isolate CSA small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 7735 907 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus sp.
18286845 18286845 PRJNA438572_P_NODE_8095_length_357_cov_1.940141_g7976_i0 PRJNA438572 8095 357 1.940141 6.92630337 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 291 6.58e-74   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g7976 i0 82.621 50.7759103641457 351 39 98 14 6 354 3691 4021 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 18127 291 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
21492796 21492796 PRJNA438572_P_NODE_13177_length_285_cov_1.471698_g13058_i0 PRJNA438572 13177 285 1.471698 4.1943393 Glissomonadida 1238681 SAR_Eukaryotes SAR_Eukaryotes 521 1.6699999999999996e-143   NTclustered gi|2030163897|gb|MZ044034.1| 1808984 g13058 i0 99.649 67.4245614035088 285 1 100 0 1 285 577 293 Rosculus terrestris isolate S14D1 small subunit ribosomal RNA gene, partial sequence blastn 19216 521 1 Eukaryota Sar   Cercozoa     Guttulinopsidae Rosculus Rosculus terrestris
22111589 22111589 PRJNA438572_P_NODE_16538_length_255_cov_1.285714_g16419_i0 PRJNA438572 16538 255 1.285714 3.2785707 Cryothecomonas sp. APCC MC5-1Cryo 741088 SAR_Eukaryotes SAR_Eukaryotes 379 9.359999999999998e-101   NTclustered gi|290760480|gb|GQ144683.1| 741088 g16419 i0 93.385 103.580392156863 257 13 100 4 1 255 1820 1566 Cryothecomonas sp. APCC MC5-1Cryo large subunit ribosomal RNA gene, partial sequence blastn 26413 379 1 Eukaryota Sar   Cercozoa Thecofilosea Cryomonadida Protaspidae Cryothecomonas Cryothecomonas sp. APCC MC5-1Cryo
26917805 26917805 PRJNA438572_P_NODE_20942_length_247_cov_0.896552_g20823_i0 PRJNA438572 20942 247 0.896552 2.21448344 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 110 7.310000000000001e-27   NR AAO89069.1 227086 g20823 i0 67.1 0.959514170040486 79 25 96 1 3 239 89 166 AAO89069.1 cytosolic class I fructose-1,6-bisphosphate aldolase [Bigelowiella natans] diamond 237 110 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
28844285 28844285 PRJNA438572_P_NODE_12528_length_291_cov_1.431193_g12409_i0 PRJNA438572 12528 291 1.431193 4.16477163 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 119 5.600000000000001e-30   NR MES1909879.1 1215613 g12409 i0 60.4 3.88659793814433 96 36 99 1 289 2 111 204 MES1909879.1 hypothetical protein [Cercozoa sp. M6MM] diamond 1131 119 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
29428884 29428884 PRJNA438572_P_NODE_7309_length_374_cov_1.036545_g7190_i0 PRJNA438572 7309 374 1.036545 3.8766783 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 103 7.39e-24   NR AAT09089.1 227086 g7190 i0 49.5 1.67647058823529 103 50 81 1 311 9 8 110 AAT09089.1 calmodulin like myosin light chain [Bigelowiella natans] diamond 627 103 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
29444143 29444143 PRJNA438572_P_NODE_22590_length_244_cov_1.824561_g22471_i0 PRJNA438572 22590 244 1.824561 4.45192884 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 90.1 7.66e-19   NR MES1913326.1 1215613 g22471 i0 58.8 1.9672131147541 80 33 98.4 0 240 1 366 445 MES1913326.1 hypothetical protein [Cercozoa sp. M6MM] diamond 480 90.1 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
30486833 30486833 PRJNA438572_P_NODE_3313_length_541_cov_1.000000_g3195_i0 PRJNA438572 3313 541 1 5.41 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 88.2 2.1e-17   NR MES1908730.1 1215613 g3195 i0 48.7 0.432532347504621 78 40 43.3 0 8 241 169 246 MES1908730.1 hypothetical protein [Cercozoa sp. M6MM] diamond 234 88.2 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31940758 31940758 PRJNA438572_P_NODE_18737_length_250_cov_0.966102_g18618_i0 PRJNA438572 18737 250 0.966102 2.415255 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 98.2 9.52e-24   NR AAT09077.1 227086 g18618 i0 60.8 0.888 74 29 88.8 0 225 4 1 74 AAT09077.1 transcription factor BTF3 [Bigelowiella natans] diamond 222 98.2 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
31940765 31940765 PRJNA438572_P_NODE_6977_length_381_cov_1.672078_g6858_i0 PRJNA438572 6977 381 1.672078 6.37061718 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 117 4.43e-28   NR MES1909771.1 1215613 g6858 i0 46 1.97637795275591 126 68 99.2 0 1 378 38 163 MES1909771.1 hypothetical protein [Cercozoa sp. M6MM] diamond 753 117 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
32115588 32115588 PRJNA438572_P_NODE_13618_length_281_cov_1.995192_g13499_i0 PRJNA438572 13618 281 1.995192 5.60648952 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 70.1 1.34e-11   NR MES1916036.1 1215613 g13499 i0 42.7 3.5017793594306 82 46 87.5 1 255 10 6 86 MES1916036.1 hypothetical protein [Cercozoa sp. M6MM] diamond 984 70.1 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;