RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA438572", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 4 ✖

tax_clade 1

  • Metamonada · 4 ✖

bioproject 1

  • PRJNA438572 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27092311 27092311 PRJNA438572_P_NODE_21042_length_247_cov_0.896552_g20923_i0 PRJNA438572 21042 247 0.896552 2.21448344 Giardia 5740 Fornicata other_Eukaryota 51.6 2.96e-5   NR ESU41085.1 5741 g20923 i0 47.3 1.33603238866397 55 22 66.8 2 222 58 221 268 ESU41085.1 Variant-specific surface protein [Giardia intestinalis] diamond 330 51.6 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
27897129 27897129 PRJNA438572_P_NODE_1965_length_692_cov_1.754443_g1855_i0 PRJNA438572 1965 692 1.754443 12.14074556 Hexamita inflata 28002 Fornicata other_Eukaryota 72.8 6.5e-11   NR CAK8746233.1 28002 g1855 i0 34.6 1.80346820809249 208 107 90.2 3 629 6 186 364 CAK8746233.1 HINF_020048 [Hexamita inflata] diamond 1248 72.8 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Hexamita Hexamita inflata
29759952 29759952 PRJNA438572_P_NODE_6591_length_391_cov_0.981132_g6472_i0 PRJNA438572 6591 391 0.981132 3.83622612 Giardia intestinalis assemblage B 1394984 Fornicata other_Eukaryota 48.5 0.00108   NR KWX14910.1 1394984 g6472 i0 45.5 1.22762148337596 66 31 50.6 3 40 237 105 165 KWX14910.1 Variant-specific surface protein [Giardia intestinalis assemblage B] diamond 480 48.5 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32352548 32352548 PRJNA438572_P_NODE_6819_length_385_cov_1.403846_g6700_i0 PRJNA438572 6819 385 1.403846 5.4048071 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 92.4 2.94e-20   NR XP_067768105.1 348837 g6700 i0 41.4 0.864935064935065 111 64 85.7 1 335 6 22 132 XP_067768105.1 Ribosomal protein L10a [Spironucleus salmonicida] diamond 333 92.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;