RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA438572", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA438572 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9363078 9363078 PRJNA438572_P_NODE_23808_length_243_cov_0.917647_g23689_i0 PRJNA438572 23808 243 0.917647 2.22988221 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 353 5.36e-93   NTclustered gi|2874253728|emb|OY969570.1| 412054 g23689 i0 93.033 198.765432098765 244 13 99 4 1 242 172066 172307 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 48300 353 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11913767 11913767 PRJNA438572_P_NODE_20010_length_248_cov_1.702857_g19891_i0 PRJNA438572 20010 248 1.702857 4.22308536 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 82.4 2.86e-11   NTclustered gi|2874254107|emb|OY970192.1| 412054 g19891 i0 85.897 19.5645161290323 78 9 31 2 171 247 4281626 4281702 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 4852 82.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18286818 18286818 PRJNA438572_P_NODE_6955_length_382_cov_1.009709_g6836_i0 PRJNA438572 6955 382 1.009709 3.85708838 Pseudomonadati 3379134 Bacteria Bacteria 117 1.22e-29   NR HVA56640.1 2026741 g6836 i0 56.6 4.45287958115183 113 47 88.7 1 366 28 30 140 HVA56640.1 SDR family NAD(P)-dependent oxidoreductase [Gemmatimonadaceae bacterium] diamond 1701 118 0.991525423728814 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;