RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

30 rows where bioproject = "PRJNA438111", tax_kingdom = "Pseudomonadati" and tax_phylum = "Nitrospirota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 30 ✖

tax_kingdom 1

  • Pseudomonadati · 30 ✖

bioproject 1

  • PRJNA438111 · 30 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9362011 9362011 PRJNA438111_P_NODE_29868_length_210_cov_4.425414_g29243_i0 PRJNA438111 29868 210 4.425414 9.2933694 Nitrospira tepida 2973512 Bacteria Bacteria 202 1.73e-47   NTclustered gi|2526808154|emb|OX365700.1| 2973512 g29243 i0 83.092 8.88571428571429 207 29 99 4 8 210 4340884 4341088 Nitrospira sp. DNF genome assembly, chromosome: NsDNF blastn 1866 202 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira tepida
17012123 17012123 PRJNA438111_P_NODE_90194_length_150_cov_4.619835_g89569_i0 PRJNA438111 90194 150 4.619835 6.9297525 Nitrospira sp. 70125 Bacteria Bacteria 117 4.27e-22   NTclustered gi|2511635996|gb|CP126122.1| 70125 g89569 i0 81.081 0.986666666666667 148 26 98 2 4 150 4359354 4359208 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 148 117 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
24660695 24660695 PRJNA438111_P_NODE_60400_length_171_cov_2.471831_g59775_i0 PRJNA438111 60400 171 2.471831 4.22683101 Nitrospira sp. 70125 Bacteria Bacteria 215 1.73e-51   NTclustered gi|2290907019|gb|CP060499.1| 70125 g59775 i0 89.82 16.2280701754386 167 17 98 0 5 171 2718951 2719117 MAG: Nitrospira sp. isolate DH1 chromosome, complete genome blastn 2775 215 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
26632795 26632795 PRJNA438111_P_NODE_85421_length_154_cov_2.008000_g84796_i0 PRJNA438111 85421 154 2.008 3.09232 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 48.5 1.02e-4   NR HEU0068696.1 2026770 g84796 i0 39.6 1.92857142857143 48 29 93.5 0 8 151 492 539 HEU0068696.1 DUF4038 domain-containing protein [Nitrospiraceae bacterium] diamond 297 48.5 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
26839371 26839371 PRJNA438111_P_NODE_27561_length_210_cov_7.298343_g26936_i0 PRJNA438111 27561 210 7.298343 15.3265203 Pseudomonadati 3379134 Bacteria Bacteria 56.2 4.01e-7   NR HEU5093494.1 70125 g26936 i0 78.8 3.22857142857143 33 7 47.1 0 210 112 184 216 HEU5093494.1 integrase core domain-containing protein [Nitrospira sp.] diamond 678 56.6 0.992932862190813 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
26980993 26980993 PRJNA438111_P_NODE_59202_length_172_cov_2.860140_g58577_i0 PRJNA438111 59202 172 2.86014 4.9194408 Thermodesulfovibrionales bacterium 2814272 Bacteria Bacteria 51.2 6.12e-6   NR MFN3479634.1 2814272 g58577 i0 57.9 1.32558139534884 38 16 66.3 0 115 2 2 39 MFN3479634.1 AmmeMemoRadiSam system protein A [Thermodesulfovibrionales bacterium] diamond 228 51.2 1 Bacteria   Pseudomonadati Nitrospirota Thermodesulfovibrionia Thermodesulfovibrionales     Thermodesulfovibrionales bacterium
26997202 26997202 PRJNA438111_P_NODE_30922_length_210_cov_3.828729_g30297_i0 PRJNA438111 30922 210 3.828729 8.0403309 Nitrospira 1234 Bacteria Bacteria 64.3 4.55e-10   NR MDF2756465.1 70125 g30297 i0 93.8 3.2 32 2 45.7 0 208 113 207 238 MDF2756465.1 zitB [Nitrospira sp.] diamond 672 64.3 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27123579 27123579 PRJNA438111_P_NODE_65602_length_167_cov_4.007246_g64977_i0 PRJNA438111 65602 167 4.007246 6.69210082 Nitrospira 1234 Bacteria Bacteria 85.9 8.34e-18   NR MCA9421735.1 70125 g64977 i0 67.3 3.95209580838323 55 18 98.8 0 3 167 746 800 MCA9421735.1 hypothetical protein [Nitrospira sp.] diamond 660 85.9 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27265716 27265716 PRJNA438111_P_NODE_81203_length_157_cov_2.171875_g80578_i0 PRJNA438111 81203 157 2.171875 3.40984375 Nitrospira sp. 70125 Bacteria Bacteria 103 6.099999999999999e-25   NR HET9607198.1 70125 g80578 i0 96.2 0.993630573248408 52 2 99.4 0 2 157 15 66 HET9607198.1 UDP-glucuronic acid decarboxylase family protein [Nitrospira sp.] diamond 156 103 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
27676451 27676451 PRJNA438111_P_NODE_61984_length_170_cov_1.836879_g61359_i0 PRJNA438111 61984 170 1.836879 3.1226943 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 68.2 2.59e-13   NR HEX4968601.1 2026770 g61359 i0 75.6 0.794117647058823 45 10 79.4 1 34 168 27 70 HEX4968601.1 hypothetical protein [Nitrospiraceae bacterium] diamond 135 68.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
27913370 27913370 PRJNA438111_P_NODE_68425_length_165_cov_4.875000_g67800_i0 PRJNA438111 68425 165 4.875 8.04375 Bacteria 2 Bacteria Bacteria 112 1.17e-28   NR HWI68851.1 2026770 g67800 i0 96.3 1.96363636363636 54 2 98.2 0 2 163 41 94 HWI68851.1 hypothetical protein [Nitrospiraceae bacterium] diamond 324 112 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
27992036 27992036 PRJNA438111_P_NODE_32405_length_210_cov_3.392265_g31780_i0 PRJNA438111 32405 210 3.392265 7.1237565 Candidatus Nitrospira nitrosa 1742972 Bacteria Bacteria 70.5 2.93e-12   NR WP_090745256.1 1742972 g31780 i0 100 0.942857142857143 33 0 47.1 0 2 100 97 129 WP_090745256.1 sodium:calcium antiporter [Candidatus Nitrospira nitrosa] diamond 198 70.5 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Candidatus Nitrospira nitrosa
28054963 28054963 PRJNA438111_P_NODE_46605_length_185_cov_5.865385_g45980_i0 PRJNA438111 46605 185 5.865385 10.85096225 Nitrospira sp. SCGC AG-212-E16 1799664 Bacteria Bacteria 101 1.5799999999999998e-23   NR OAI44169.1 1799664 g45980 i0 80.6 1.99459459459459 62 11 98.9 1 1 183 295 356 OAI44169.1 hypothetical protein AYO43_02455 [Nitrospira sp. SCGC AG-212-E16] diamond 369 101 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. SCGC AG-212-E16
28181128 28181128 PRJNA438111_P_NODE_56146_length_175_cov_2.917808_g55521_i0 PRJNA438111 56146 175 2.917808 5.106164 Nitrospiria bacterium 2306052 Bacteria Bacteria 45.4 0.00165   NR MFQ5598816.1 2306052 g55521 i0 52.6 0.651428571428571 38 18 65.1 0 174 61 261 298 MFQ5598816.1 hydroxymethylbilane synthase [Nitrospiria bacterium] diamond 114 45.4 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria       Nitrospiria bacterium
28212695 28212695 PRJNA438111_P_NODE_68646_length_165_cov_3.617647_g68021_i0 PRJNA438111 68646 165 3.617647 5.96911755 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 98.2 4.38e-23   NR HWI68690.1 2026770 g68021 i0 83.3 1.96363636363636 54 9 98.2 0 2 163 210 263 HWI68690.1 transporter [Nitrospiraceae bacterium] diamond 324 98.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
28481917 28481917 PRJNA438111_P_NODE_62886_length_169_cov_3.042857_g62261_i0 PRJNA438111 62886 169 3.042857 5.14242833 Pseudomonadati 3379134 Bacteria Bacteria 79.3 1.74e-15   NR MBM4122313.1 70125 g62261 i0 72.7 18.585798816568 55 15 97.6 0 166 2 92 146 MBM4122313.1 sulfate transporter [Nitrospira sp.] diamond 3141 79.3 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
29254607 29254607 PRJNA438111_P_NODE_28489_length_210_cov_5.447514_g27864_i0 PRJNA438111 28489 210 5.447514 11.4397794 Nitrospirota bacterium 2026887 Bacteria Bacteria 70.1 5.56e-12   NR MCL5021971.1 2026887 g27864 i0 87.9 3.3 33 4 47.1 0 99 1 141 173 MCL5021971.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Nitrospirota bacterium] diamond 693 70.1 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium
29412667 29412667 PRJNA438111_P_NODE_85749_length_153_cov_5.129032_g85124_i0 PRJNA438111 85749 153 5.129032 7.84741896 Nitrospira sp. 70125 Bacteria Bacteria 62 1.7e-9   NR MBS0173558.1 70125 g85124 i0 55.3 0.92156862745098 47 21 92.2 0 12 152 1499 1545 MBS0173558.1 hypothetical protein [Nitrospira sp.] diamond 141 62 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
29475589 29475589 PRJNA438111_P_NODE_27910_length_210_cov_6.392265_g27285_i0 PRJNA438111 27910 210 6.392265 13.4237565 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 69.7 7.31e-12   NR HLA62571.1 2026770 g27285 i0 100 0.942857142857143 33 0 47.1 0 3 101 8 40 HLA62571.1 glycogen debranching N-terminal domain-containing protein [Nitrospiraceae bacterium] diamond 198 69.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
29507451 29507451 PRJNA438111_P_NODE_88030_length_152_cov_2.268293_g87405_i0 PRJNA438111 88030 152 2.268293 3.44780536 Leptospirillum ferrooxidans 180 Bacteria Bacteria 42.7 0.0106   NR WP_014449368.1 180 g87405 i0 46.7 0.888157894736842 45 24 88.8 0 1 135 236 280 WP_014449368.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha [Leptospirillum ferrooxidans] diamond 135 42.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Leptospirillum Leptospirillum ferrooxidans
29633395 29633395 PRJNA438111_P_NODE_85950_length_153_cov_4.120968_g85325_i0 PRJNA438111 85950 153 4.120968 6.30508104 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 91.7 1.15e-20   NR HWI68690.1 2026770 g85325 i0 91.1 0.882352941176471 45 4 88.2 0 136 2 61 105 HWI68690.1 transporter [Nitrospiraceae bacterium] diamond 135 91.7 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
30612911 30612911 PRJNA438111_P_NODE_28353_length_210_cov_5.668508_g27728_i0 PRJNA438111 28353 210 5.668508 11.9038668 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 109 1.49e-26   NR HEX6825579.1 2026770 g27728 i0 91.2 0.814285714285714 57 1 81.4 1 171 1 295 347 HEX6825579.1 IS3 family transposase [Nitrospiraceae bacterium] diamond 171 109 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
30724143 30724143 PRJNA438111_P_NODE_55294_length_176_cov_2.700680_g54669_i0 PRJNA438111 55294 176 2.70068 4.7531968000000004 Pseudomonadati 3379134 Bacteria Bacteria 93.6 1.85e-22   NR HET9606045.1 70125 g54669 i0 70.7 1.97727272727273 58 17 98.9 0 175 2 44 101 HET9606045.1 GAF domain-containing protein [Nitrospira sp.] diamond 348 94 0.995744680851064 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
30977107 30977107 PRJNA438111_P_NODE_31114_length_210_cov_3.773481_g30489_i0 PRJNA438111 31114 210 3.773481 7.9243101 Bacteria 2 Bacteria Bacteria 67.8 2.97e-11   NR TKB60150.1 70125 g30489 i0 93.9 2.35714285714286 33 2 47.1 0 2 100 91 123 TKB60150.1 MAG: hypothetical protein E8D49_06990 [Nitrospira sp.] diamond 495 68.2 0.994134897360704 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31244997 31244997 PRJNA438111_P_NODE_76395_length_160_cov_5.404580_g75770_i0 PRJNA438111 76395 160 5.40458 8.647328 Nitrospira sp. 70125 Bacteria Bacteria 50.4 1.71e-5   NR TKS59625.1 70125 g75770 i0 74.3 0.65625 35 9 65.6 0 108 4 179 213 TKS59625.1 MAG: hypothetical protein EWM73_03282 [Nitrospira sp.] diamond 105 50.4 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31593156 31593156 PRJNA438111_P_NODE_84776_length_154_cov_3.408000_g84151_i0 PRJNA438111 84776 154 3.408 5.24832 Nitrospira sp. CG24B 1985132 Bacteria Bacteria 97.1 7.85e-22   NR THJ15552.1 1985132 g84151 i0 100 0.974025974025974 50 0 97.4 0 152 3 461 510 THJ15552.1 MAG: alpha-glucan family phosphorylase [Nitrospira sp. CG24B] diamond 150 97.1 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp. CG24B
31735636 31735636 PRJNA438111_P_NODE_37857_length_197_cov_4.267857_g37232_i0 PRJNA438111 37857 197 4.267857 8.40767829 Nitrospira 1234 Bacteria Bacteria 70.5 3.31e-12   NR HKR79007.1 70125 g37232 i0 50 4.50761421319797 76 27 99 1 3 197 220 295 HKR79007.1 FAD-dependent oxidoreductase [Nitrospira sp.] diamond 888 70.5 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
31909248 31909248 PRJNA438111_P_NODE_28017_length_210_cov_6.110497_g27392_i0 PRJNA438111 28017 210 6.110497 12.8320437 Nitrospira sp. 70125 Bacteria Bacteria 61.2 6.43e-9   NR HNE33130.1 70125 g27392 i0 78.9 0.542857142857143 38 8 54.3 0 1 114 250 287 HNE33130.1 DUF5309 domain-containing protein [Nitrospira sp.] diamond 114 61.2 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
32762532 32762532 PRJNA438111_P_NODE_22720_length_226_cov_7.598985_g22095_i0 PRJNA438111 22720 226 7.598985 17.1737061 Nitrospiraceae bacterium 2026770 Bacteria Bacteria 58.9 2.94e-8   NR HEX6826118.1 2026770 g22095 i0 69.2 1.4070796460177 39 12 51.8 0 22 138 6 44 HEX6826118.1 hypothetical protein [Nitrospiraceae bacterium] diamond 318 58.9 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae   Nitrospiraceae bacterium
32810342 32810342 PRJNA438111_P_NODE_33080_length_209_cov_4.705556_g32455_i0 PRJNA438111 33080 209 4.705556 9.83461204 Pseudomonadati 3379134 Bacteria Bacteria 49.7 8.26e-5   NR MBI3607598.1 2026887 g32455 i0 77.4 2.25358851674641 31 7 44.5 0 94 2 241 271 MBI3607598.1 AI-2E family transporter YdiK [Nitrospirota bacterium] diamond 471 49.7 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;