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contig_metadata

33 rows where bioproject = "PRJNA438111", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 33 ✖

tax_kingdom 1

  • Metazoa · 33 ✖

tax_clade 1

bioproject 1

  • PRJNA438111 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
434423 434423 PRJNA438111_P_NODE_62481_length_169_cov_5.528571_g61856_i0 PRJNA438111 62481 169 5.528571 9.34328499 root 1 Root_unresolved Root_unresolved 80.5 6.09e-16   NR KAI6182597.1 293665 g61856 i0 72.7 16.6508875739645 55 14 95.9 1 2 163 354 408 KAI6182597.1 Homogentisate 1,2-dioxygenase [Aphelenchoides bicaudatus] diamond 2814 81.3 0.990159901599016 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
8087461 8087461 PRJNA438111_P_NODE_45347_length_187_cov_2.677215_g44722_i0 PRJNA438111 45347 187 2.677215 5.00639205 Caenorhabditis briggsae 6238 Nematoda Nematoda 119 1.56e-22   NTclustered gi|2158430750|ref|XM_045244082.1| 6238 g44722 i0 81.69 3.74331550802139 142 26 76 0 1 142 4573 4714 Caenorhabditis briggsae Protein CBR-PRP-8 (Cbr-prp-8), partial mRNA blastn 700 119 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
11912657 11912657 PRJNA438111_P_NODE_22150_length_229_cov_3.550000_g21525_i0 PRJNA438111 22150 229 3.55 8.1295 Strongyloides stercoralis 6248 Nematoda Nematoda 91.6 4.33e-14   NTclustered gi|1851063735|dbj|LC533901.1| 6248 g21525 i0 75.122 87.7554585152838 205 45 88 6 26 227 10842 11043 Strongyloides stercoralis MYZ001_8 mitochondrial DNA, complete genome blastn 20096 91.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides stercoralis
20835653 20835653 PRJNA438111_P_NODE_2937_length_567_cov_67.262082_g2461_i0 PRJNA438111 2937 567 67.262082 381.37600494 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 239 1.3800000000000001e-77   NR KFD48681.1 68888 g2461 i0 72.8 11.9100529100529 162 39 83.1 1 532 62 11 172 KFD48681.1 hypothetical protein M513_10465 [Trichuris suis] diamond 6753 241 0.991701244813278 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
22110628 22110628 PRJNA438111_P_NODE_3118_length_550_cov_126.654511_g2629_i0 PRJNA438111 3118 550 126.654511 696.5998105 Strongyloides ratti 34506 Nematoda Nematoda 322 3.74e-83   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g2629 i0 83.429 97.1 350 54 63 4 1 348 337 684 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 53405 322 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
23387033 23387033 PRJNA438111_P_NODE_9039_length_337_cov_4.987013_g8419_i0 PRJNA438111 9039 337 4.987013 16.80623381 Pristionchus pacificus 54126 Nematoda Nematoda 112 8.5e-27   NR KAF8372390.1 54126 g8419 i0 50.5 0.970326409495549 109 54 97 0 337 11 288 396 KAF8372390.1 hypothetical protein PRIPAC_78819 [Pristionchus pacificus] diamond 327 112 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
26886300 26886300 PRJNA438111_P_NODE_48081_length_184_cov_1.677419_g47456_i0 PRJNA438111 48081 184 1.677419 3.08645096 Ditylenchus destructor 166010 Nematoda Nematoda 79 2.84e-15   NR KAI1716295.1 166010 g47456 i0 55.9 4.875 59 26 96.2 0 3 179 1221 1279 KAI1716295.1 AAA domain (dynein-related subfamily) domain-containing protein [Ditylenchus destructor] diamond 897 79 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
26934073 26934073 PRJNA438111_P_NODE_54082_length_177_cov_3.581081_g53457_i0 PRJNA438111 54082 177 3.581081 6.33851337 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 1.62e-5   NR KAI1707534.1 166010 g53457 i0 40.7 2.89830508474576 59 35 100 0 1 177 752 810 KAI1707534.1 rasGEF domain-containing protein [Ditylenchus destructor] diamond 513 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
27044339 27044339 PRJNA438111_P_NODE_41542_length_192_cov_2.478528_g40917_i0 PRJNA438111 41542 192 2.478528 4.75877376 Caenorhabditis angaria 860376 Nematoda Nematoda 57.4 1.27e-7   NR CAI5442197.1 860376 g40917 i0 47.5 1.921875 59 28 92.2 1 191 15 864 919 CAI5442197.1 unnamed protein product [Caenorhabditis angaria] diamond 369 57.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
27234047 27234047 PRJNA438111_P_NODE_9803_length_326_cov_3.454545_g9182_i0 PRJNA438111 9803 326 3.454545 11.2618167 Caenorhabditis angaria 860376 Nematoda Nematoda 108 1.7500000000000002e-26   NR CAI5441706.1 860376 g9182 i0 56.4 2.02453987730061 110 45 98.5 2 321 1 60 169 CAI5441706.1 unnamed protein product [Caenorhabditis angaria] diamond 660 108 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
27566079 27566079 PRJNA438111_P_NODE_81104_length_157_cov_2.320312_g80479_i0 PRJNA438111 81104 157 2.320312 3.64288984 Onchocercidae 6296 Nematoda Nematoda 69.3 4.89e-12   NR VBB28494.1 6277 g80479 i0 55.8 9.70700636942675 52 23 99.4 0 156 1 345 396 VBB28494.1 unnamed protein product [Acanthocheilonema viteae] diamond 1524 69.7 0.994261119081779 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
27708202 27708202 PRJNA438111_P_NODE_45104_length_187_cov_4.037975_g44479_i0 PRJNA438111 45104 187 4.037975 7.55101325 Ostertagia ostertagi 6317 Nematoda Nematoda 109 9.4e-27   NR KAK6021278.1 6317 g44479 i0 90.3 1.98930481283422 62 6 99.5 0 1 186 262 323 KAK6021278.1 putative carbamoyl-phosphate synthase, small subunit [Ostertagia ostertagi] diamond 372 109 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Ostertagia Ostertagia ostertagi
27850228 27850228 PRJNA438111_P_NODE_43804_length_189_cov_2.537500_g43179_i0 PRJNA438111 43804 189 2.5375 4.795875 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 99.4 1.73e-22   NR NP_001359801.1 6239 g43179 i0 66.7 24 63 21 100 0 189 1 411 473 NP_001359801.1 alanine transaminase [Caenorhabditis elegans] diamond 4536 100 0.994 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
27913373 27913373 PRJNA438111_P_NODE_71965_length_163_cov_2.746269_g71340_i0 PRJNA438111 71965 163 2.746269 4.47641847 Chromadorea 119089 Nematoda Nematoda 51.2 1.3e-5   NR KAI6185711.1 269767 g71340 i0 46.8 5.02453987730061 47 25 86.5 0 4 144 536 582 KAI6185711.1 hypothetical protein M3Y98_00053500 [Aphelenchoides besseyi] diamond 819 51.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
28481913 28481913 PRJNA438111_P_NODE_43706_length_189_cov_2.893750_g43081_i0 PRJNA438111 43706 189 2.89375 5.4691875 Metazoa 33208 Nematoda Nematoda 50.4 3.46e-5   NR KAI1714330.1 166010 g43081 i0 38.7 3 62 34 95.2 2 6 185 1599 1658 KAI1714330.1 AAA domain-containing protein [Ditylenchus destructor] diamond 567 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Anguinidae Ditylenchus Ditylenchus destructor
28576557 28576557 PRJNA438111_P_NODE_16267_length_262_cov_2.334764_g15642_i0 PRJNA438111 16267 262 2.334764 6.11708168 Metazoa 33208 Nematoda Nematoda 60.8 1.95e-8   NR UMM17257.1 6238 g15642 i0 62.2 26.4847328244275 37 14 42.4 0 260 150 565 601 UMM17257.1 hypothetical protein L5515_013903 [Caenorhabditis briggsae] diamond 6939 60.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
28749687 28749687 PRJNA438111_P_NODE_18087_length_250_cov_3.809955_g17462_i0 PRJNA438111 18087 250 3.809955 9.5248875 Aphelenchoides fujianensis 1052528 Nematoda Nematoda 129 1.3e-36   NR KAI6243249.1 1052528 g17462 i0 61.4 5.808 83 30 99.6 1 2 250 15 95 KAI6243249.1 RING-type domain-containing protein [Aphelenchoides fujianensis] diamond 1452 129 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides fujianensis
29018916 29018916 PRJNA438111_P_NODE_19108_length_244_cov_4.962791_g18483_i0 PRJNA438111 19108 244 4.962791 12.10921004 Metazoa 33208 Nematoda Nematoda 101 7.18e-23   NR XGW19453.1 6289 g18483 i0 54.3 18.8852459016393 81 37 99.6 0 243 1 251 331 XGW19453.1 hypothetical protein V3C99_003364 [Haemonchus contortus] diamond 4608 102 0.990196078431373 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
29081887 29081887 PRJNA438111_P_NODE_32808_length_209_cov_7.477778_g32183_i0 PRJNA438111 32808 209 7.477778 15.62855602 Metazoa 33208 Nematoda Nematoda 47.4 5.66e-4   NR GMT05242.1 358040 g32183 i0 56.7 2.85645933014354 30 13 43.1 0 118 207 245 274 GMT05242.1 hypothetical protein PENTCL1PPCAC_27416 [Pristionchus entomophagus] diamond 597 47.8 0.99163179916318 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
29097158 29097158 PRJNA438111_P_NODE_8868_length_340_cov_3.392283_g8248_i0 PRJNA438111 8868 340 3.392283 11.5337622 Dracunculus medinensis 318479 Nematoda Nematoda 68.2 1.36e-10   NR VDN58177.1 318479 g8248 i0 42.1 1.53529411764706 76 44 67.1 0 1 228 398 473 VDN58177.1 unnamed protein product [Dracunculus medinensis] diamond 522 68.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Dracunculidae Dracunculus Dracunculus medinensis
29412670 29412670 PRJNA438111_P_NODE_9329_length_333_cov_3.171053_g8709_i0 PRJNA438111 9329 333 3.171053 10.55960649 Cercopithifilaria johnstoni 2874296 Nematoda Nematoda 69.7 3.67e-11   NR CAG9538069.1 2874296 g8709 i0 36.2 2.85585585585586 105 63 93.7 2 3 314 812 913 CAG9538069.1 unnamed protein product [Cercopithifilaria johnstoni] diamond 951 69.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Cercopithifilaria Cercopithifilaria johnstoni
29570506 29570506 PRJNA438111_P_NODE_49810_length_182_cov_1.745098_g49185_i0 PRJNA438111 49810 182 1.745098 3.17607836 Strongyloides ratti 34506 Nematoda Nematoda 47.4 3.75e-4   NR XP_024506986.1 34506 g49185 i0 83.3 0.89010989010989 24 4 39.6 0 182 111 306 329 XP_024506986.1 Peptidyl-prolyl cis-trans isomerase-like 4 [Strongyloides ratti] diamond 162 47.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
29776296 29776296 PRJNA438111_P_NODE_43091_length_190_cov_1.763975_g42466_i0 PRJNA438111 43091 190 1.763975 3.3515525 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.9 1.43e-13   NR NP_509101.4 6239 g42466 i0 50 6.36315789473684 58 29 91.6 0 14 187 186 243 NP_509101.4 Homeobox protein ceh-60 [Caenorhabditis elegans] diamond 1209 73.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
30092116 30092116 PRJNA438111_P_NODE_73272_length_162_cov_3.624060_g72647_i0 PRJNA438111 73272 162 3.62406 5.8709772 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.2 7.32e-4   NR CAD5221855.1 6326 g72647 i0 40.4 7.68518518518519 47 28 87 0 142 2 591 637 CAD5221855.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 1245 46.6 0.991416309012876 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
30123715 30123715 PRJNA438111_P_NODE_61552_length_170_cov_3.000000_g60927_i0 PRJNA438111 61552 170 3 5.1 Rhabditida 6236 Nematoda Nematoda 59.7 6.03e-10   NR PIO76666.1 45464 g60927 i0 61 2.20588235294118 41 16 72.4 0 3 125 20 60 PIO76666.1 hypothetical protein TELCIR_01262 [Teladorsagia circumcincta] diamond 375 59.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Teladorsagia Teladorsagia circumcincta
30329275 30329275 PRJNA438111_P_NODE_82652_length_156_cov_2.094488_g82027_i0 PRJNA438111 82652 156 2.094488 3.26740128 Strongyloides ratti 34506 Nematoda Nematoda 46.6 5.09e-4   NR XP_024510172.1 34506 g82027 i0 38.5 2 52 32 100 0 156 1 338 389 XP_024510172.1 Fads2 protein [Strongyloides ratti] diamond 312 46.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30581259 30581259 PRJNA438111_P_NODE_69873_length_164_cov_5.259259_g69248_i0 PRJNA438111 69873 164 5.259259 8.62518476 Strongyloides ratti 34506 Nematoda Nematoda 42.4 0.0177   NR XP_024506513.1 34506 g69248 i0 46.5 1.64634146341463 43 23 78.7 0 148 20 224 266 XP_024506513.1 Vacuolar protein sorting-associated protein 52 homolog [Strongyloides ratti] diamond 270 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30929094 30929094 PRJNA438111_P_NODE_6434_length_392_cov_4.074380_g5837_i0 PRJNA438111 6434 392 4.07438 15.9715696 Halicephalobus sp. NKZ332 2598192 Nematoda Nematoda 184 8.569999999999999e-52   NR KAE9556505.1 2598192 g5837 i0 67.7 0.994897959183674 130 40 98 1 9 392 422 551 KAE9556505.1 hypothetical protein FO519_000199 [Halicephalobus sp. NKZ332] diamond 390 184 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus sp. NKZ332
31798874 31798874 PRJNA438111_P_NODE_2417_length_621_cov_8.513514_g1974_i0 PRJNA438111 2417 621 8.513514 52.86892194 Opisthokonta 33154 Nematoda Nematoda 143 6.12e-39   NR 6K00_D 6239 g1974 i0 47 5.31884057971014 181 88 85 2 1 528 30 207 6K00_D Chain D, Histone H2B 1,Histone H2A [Caenorhabditis elegans] diamond 3303 143 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
32020577 32020577 PRJNA438111_P_NODE_26738_length_212_cov_1.622951_g26113_i0 PRJNA438111 26738 212 1.622951 3.44065612 Trichinella 6333 Nematoda Nematoda 60.1 1.74e-8   NR KAL1237575.1 6334 g26113 i0 36.4 3.73584905660377 66 42 93.4 0 4 201 42 107 KAL1237575.1 VIP36-like protein [Trichinella spiralis] diamond 792 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
32495275 32495275 PRJNA438111_P_NODE_22899_length_226_cov_2.055838_g22274_i0 PRJNA438111 22899 226 2.055838 4.64619388 Rhabditida 6236 Nematoda Nematoda 72.8 7.95e-13   NR TKR77167.1 34508 g22274 i0 47.4 8.07079646017699 76 39 99.6 1 226 2 852 927 TKR77167.1 hypothetical protein L596_018187 [Steinernema carpocapsae] diamond 1824 72.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
32558678 32558678 PRJNA438111_P_NODE_22259_length_229_cov_1.485000_g21634_i0 PRJNA438111 22259 229 1.485 3.40065 Onchocercidae 6296 Nematoda Nematoda 86.7 1.04e-19   NR EJW82253.1 6293 g21634 i0 48 4.91266375545852 75 38 96.9 1 3 224 23 97 EJW82253.1 hypothetical protein WUBG_06839 [Wuchereria bancrofti] diamond 1125 87.4 0.991990846681922 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
32888415 32888415 PRJNA438111_P_NODE_88240_length_152_cov_2.016260_g87615_i0 PRJNA438111 88240 152 2.01626 3.0647152 Soboliphyme baturini 241478 Nematoda Nematoda 60.5 3.72e-9   NR VDO93477.1 241478 g87615 i0 62.5 1.59868421052632 40 15 78.9 0 13 132 138 177 VDO93477.1 unnamed protein product [Soboliphyme baturini] diamond 243 60.5 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;