RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA438111", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA438111 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2984779 2984779 PRJNA438111_P_NODE_38563_length_196_cov_4.425150_g37938_i0 PRJNA438111 38563 196 4.42515 8.673294 uncultured Ilyobacter sp. 544433 Bacteria Bacteria 60.2 1.01e-4   NTclustered gi|2814788377|emb|OY764057.2| 544433 g37938 i0 97.143 0.178571428571429 35 1 18 0 138 172 735741 735775 MAG: uncultured Ilyobacter sp. isolate b6197fd5-c757-4c76-928f-f28f0df2880b genome assembly, chromosome: 1 blastn 35 60.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter uncultured Ilyobacter sp.
4261770 4261770 PRJNA438111_P_NODE_84064_length_155_cov_2.039683_g83439_i0 PRJNA438111 84064 155 2.039683 3.16150865 Haliovirga abyssi 2996794 Bacteria Bacteria 82 1.57e-16   NR WP_307904636.1 2996794 g83439 i0 78.4 0.987096774193548 51 11 98.7 0 155 3 440 490 WP_307904636.1 ABC transporter ATP-binding protein [Haliovirga abyssi] diamond 153 82 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Haliovirgaceae Haliovirga Haliovirga abyssi
20836198 20836198 PRJNA438111_P_NODE_72577_length_163_cov_1.059701_g71952_i0 PRJNA438111 72577 163 1.059701 1.72731263 Fusobacterium animalis 76859 Bacteria Bacteria 302 1.22e-77   NTclustered gi|2706444732|gb|CP084069.1| 76859 g71952 i0 100 100 163 0 100 0 1 163 883614 883776 Fusobacterium animalis strain SB062 chromosome, complete genome blastn 16300 302 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium animalis
29871185 29871185 PRJNA438111_P_NODE_59491_length_172_cov_1.888112_g58866_i0 PRJNA438111 59491 172 1.888112 3.24755264 FCB group 1783270 Bacteria Bacteria 79.3 8.15e-16   NR WP_410208403.1 68766 g58866 i0 66 11.2848837209302 53 18 92.4 0 6 164 234 286 WP_410208403.1 2-hydroxyacid dehydrogenase, partial [Fusobacterium sp.] diamond 1941 79.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;