RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA438111" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA438111 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24660879 24660879 PRJNA438111_P_NODE_73340_length_162_cov_3.218045_g72715_i0 PRJNA438111 73340 162 3.218045 5.2132329 uncultured delta proteobacterium 34034 Bacteria Bacteria 122 1.0099999999999999e-23   NTclustered gi|2874253674|emb|OY969108.1| 34034 g72715 i0 90.323 45.9074074074074 93 9 57 0 37 129 578299 578207 MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 blastn 7437 122 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27549805 27549805 PRJNA438111_P_NODE_80604_length_157_cov_4.007812_g79979_i0 PRJNA438111 80604 157 4.007812 6.29226484 Deltaproteobacteria bacterium RBG_13_52_11 1797829 Bacteria Bacteria 70.1 2.47e-12   NR OGP53640.1 1797829 g79979 i0 59.6 1.98726114649682 52 21 99.4 0 157 2 241 292 OGP53640.1 MAG: hypothetical protein A2Y65_04815 [Deltaproteobacteria bacterium RBG_13_52_11] diamond 312 70.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_52_11
27928830 27928830 PRJNA438111_P_NODE_68165_length_166_cov_1.036496_g67540_i0 PRJNA438111 68165 166 1.036496 1.72058336 Deltaproteobacteria bacterium RIFCSPHIGHO2_ 2026735 Bacteria Bacteria 49.3 6.53e-5   NR OGQ22820.1 1797862 g67540 i0 61.4 1.78915662650602 44 15 75.9 1 2 127 534 577 OGQ22820.1 MAG: hypothetical protein A3C46_05045 [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16] diamond 297 49.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16
29271036 29271036 PRJNA438111_P_NODE_60869_length_171_cov_1.000000_g60244_i0 PRJNA438111 60869 171 1 1.71 Chloroflexota 200795 Bacteria Bacteria 111 2.15e-27   NR CAB1082196.1 334747 g60244 i0 87.5 7.85964912280702 56 7 98.2 0 2 169 199 254 CAB1082196.1 Aspartate aminotransferase (EC [Olavius algarvensis Delta 1 endosymbiont] diamond 1344 112 0.991071428571429 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis Delta 1 endosymbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;