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contig_metadata

28 rows where bioproject = "PRJNA438111", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 28 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 28 ✖

bioproject 1

  • PRJNA438111 · 28 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1709337 1709337 PRJNA438111_P_NODE_62662_length_169_cov_4.057143_g62037_i0 PRJNA438111 62662 169 4.057143 6.85657167 PVC group 1783257 Bacteria Bacteria 116 2.06e-29   NR CRH85168.1 813 g62037 i0 100 2.98224852071006 56 0 99.4 0 1 168 177 232 CRH85168.1 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase [Chlamydia trachomatis] diamond 504 116 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
2984624 2984624 PRJNA438111_P_NODE_29123_length_210_cov_4.955801_g28498_i0 PRJNA438111 29123 210 4.955801 10.4071821 PVC group 1783257 Bacteria Bacteria 62 3.96e-9   NR WP_059061069.1 389348 g28498 i0 87.9 15.9142857142857 33 4 47.1 0 1 99 135 167 WP_059061069.1 acetate--CoA ligase [Candidatus Protochlamydia naegleriophila] diamond 3342 62.4 0.993589743589744 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
4261689 4261689 PRJNA438111_P_NODE_77884_length_159_cov_4.215385_g77259_i0 PRJNA438111 77884 159 4.215385 6.70246215 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 294 1.98e-75   NTclustered gi|336478352|emb|FR872580.1| 765952 g77259 i0 100 1 159 0 100 0 1 159 1709080 1709238 Parachlamydia acanthamoebae UV-7, complete genome blastn 159 294 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
10638175 10638175 PRJNA438111_P_NODE_49329_length_182_cov_3.660131_g48704_i0 PRJNA438111 49329 182 3.660131 6.66143842 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 331 1.7800000000000002e-86   NTclustered gi|336478352|emb|FR872580.1| 765952 g48704 i0 99.451 1 182 1 100 0 1 182 542290 542471 Parachlamydia acanthamoebae UV-7, complete genome blastn 182 331 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
11293668 11293668 PRJNA438111_P_NODE_28949_length_210_cov_5.082873_g28324_i0 PRJNA438111 28949 210 5.082873 10.6740333 Pseudomonadati 3379134 Bacteria Bacteria 54.7 0.005   NTclustered gi|2874253676|emb|OY969110.1| 305355 g28324 i0 100 1.4952380952381 29 0 14 0 182 210 1208521 1208493 MAG: uncultured Chlamydiae bacterium isolate MFD00082.bin.c.5 genome assembly, chromosome: 1 blastn 314 54.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       uncultured Chlamydiae bacterium
15736779 15736779 PRJNA438111_P_NODE_41393_length_192_cov_3.214724_g40768_i0 PRJNA438111 41393 192 3.214724 6.17227008 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 355 1.13e-93   NTclustered gi|336478352|emb|FR872580.1| 765952 g40768 i0 100 1 192 0 100 0 1 192 2654494 2654303 Parachlamydia acanthamoebae UV-7, complete genome blastn 192 355 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
20836347 20836347 PRJNA438111_P_NODE_837_length_999_cov_9.491753_g610_i0 PRJNA438111 837 999 9.491753 94.82261247 Chlamydiales bacterium 2047757 Bacteria Bacteria 334 1.54e-108   NR MDF2576657.1 2047757 g610 i0 56.2 3.46846846846847 292 119 87.7 4 997 122 13 295 MDF2576657.1 asparaginyl-tRNA synthetase [Chlamydiales bacterium] diamond 3465 334 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
23386637 23386637 PRJNA438111_P_NODE_61619_length_170_cov_2.858156_g60994_i0 PRJNA438111 61619 170 2.858156 4.8588652 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 292 7.69e-75   NTclustered gi|336478352|emb|FR872580.1| 765952 g60994 i0 97.647 5.82352941176471 170 4 100 0 1 170 2278497 2278666 Parachlamydia acanthamoebae UV-7, complete genome blastn 990 292 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
28023553 28023553 PRJNA438111_P_NODE_29505_length_210_cov_4.580110_g28880_i0 PRJNA438111 29505 210 4.58011 9.618231 Simkaniaceae bacterium 2698248 Bacteria Bacteria 72 1.18e-12   NR MCY3975055.1 2698248 g28880 i0 69.8 2.91428571428571 53 15 74.3 1 210 55 321 373 MCY3975055.1 cytochrome o ubiquinol oxidase subunit I [Simkaniaceae bacterium] diamond 612 72 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae   Simkaniaceae bacterium
28023610 28023610 PRJNA438111_P_NODE_85745_length_153_cov_5.161290_g85120_i0 PRJNA438111 85745 153 5.16129 7.8967737 Chlamydia sp. 32-24 1895742 Bacteria Bacteria 50.1 2.88e-5   NR OJU82531.1 1895742 g85120 i0 67.7 3.3921568627451 31 10 60.8 0 4 96 143 173 OJU82531.1 MAG: tRNA 2-thiouridine(34) synthase MnmA [Chlamydia sp. 32-24] diamond 519 50.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia sp. 32-24
28686843 28686843 PRJNA438111_P_NODE_73407_length_162_cov_3.127820_g72782_i0 PRJNA438111 73407 162 3.12782 5.0670684 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 43.5 0.00689   NR MBA3957633.1 2052176 g72782 i0 44.2 0.796296296296296 43 24 79.6 0 34 162 50 92 MBA3957633.1 V-type ATP synthase subunit I [Parachlamydiaceae bacterium] diamond 129 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28781096 28781096 PRJNA438111_P_NODE_16987_length_257_cov_2.793860_g16362_i0 PRJNA438111 16987 257 2.79386 7.1802202 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 53.5 5.91e-6   NR HRD54972.1 2052176 g16362 i0 66.7 0.350194552529183 30 10 35 0 1 90 254 283 HRD54972.1 deoxyribonuclease IV [Parachlamydiaceae bacterium] diamond 90 53.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
28907312 28907312 PRJNA438111_P_NODE_44008_length_189_cov_1.600000_g43383_i0 PRJNA438111 44008 189 1.6 3.024 Chlamydiota bacterium 2081524 Bacteria Bacteria 80.9 1.86e-17   NR MBM3201310.1 2081524 g43383 i0 75.8 0.984126984126984 62 14 98.4 1 3 188 93 153 MBM3201310.1 hypothetical protein [Chlamydiota bacterium] diamond 186 80.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29145250 29145250 PRJNA438111_P_NODE_63969_length_168_cov_4.856115_g63344_i0 PRJNA438111 63969 168 4.856115 8.1582732 Bacteria 2 Bacteria Bacteria 70.9 4.33e-13   NR OGN59233.1 1797601 g63344 i0 59.6 4.60714285714286 52 21 92.9 0 164 9 135 186 OGN59233.1 MAG: hypothetical protein A3F40_00875 [Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_27_8] diamond 774 70.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_27_8
29160405 29160405 PRJNA438111_P_NODE_40629_length_193_cov_4.048780_g40004_i0 PRJNA438111 40629 193 4.04878 7.8141454 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 59.7 2.01e-8   NR MBA3958034.1 2052176 g40004 i0 97 1.83419689119171 33 1 51.3 0 193 95 401 433 MBA3958034.1 chaperonin GroEL [Parachlamydiaceae bacterium] diamond 354 59.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29365999 29365999 PRJNA438111_P_NODE_28549_length_210_cov_5.375691_g27924_i0 PRJNA438111 28549 210 5.375691 11.2889511 Parachlamydia 83551 Bacteria Bacteria 45.8 0.00199   NR WP_006341230.1 83552 g27924 i0 68.8 1.74285714285714 32 10 45.7 0 98 3 25 56 WP_006341230.1 UvrD-helicase domain-containing protein [Parachlamydia acanthamoebae] diamond 366 45.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
29492200 29492200 PRJNA438111_P_NODE_29650_length_210_cov_4.519337_g29025_i0 PRJNA438111 29650 210 4.519337 9.4906077 Bacteria 2 Bacteria Bacteria 62 2.9e-9   NR MBA2728146.1 2052176 g29025 i0 87.5 1.38571428571429 32 4 45.7 0 112 207 234 265 MBA2728146.1 methyltransferase domain-containing protein [Parachlamydiaceae bacterium] diamond 291 62 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
29981222 29981222 PRJNA438111_P_NODE_47411_length_184_cov_6.045161_g46786_i0 PRJNA438111 47411 184 6.045161 11.12309624 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 46.2 0.00101   NR MFV0339950.1 2052176 g46786 i0 44 0.815217391304348 50 27 81.5 1 2 151 121 169 MFV0339950.1 GNAT family N-acetyltransferase [Parachlamydiaceae bacterium] diamond 150 46.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30250502 30250502 PRJNA438111_P_NODE_74172_length_162_cov_1.067669_g73547_i0 PRJNA438111 74172 162 1.067669 1.72962378 root 1 Root_unresolved Root_unresolved 63.5 4.7e-10   NR QLH35438.1 2052176 g73547 i0 55.8 1.94444444444444 52 23 96.3 0 2 157 15 66 QLH35438.1 MAG: YncE family protein [Parachlamydiaceae bacterium] diamond 315 63.9 0.993740219092332 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30455465 30455465 PRJNA438111_P_NODE_70633_length_164_cov_2.103704_g70008_i0 PRJNA438111 70633 164 2.103704 3.45007456 Chlamydiae bacterium CG1 2081524 Bacteria Bacteria 42.4 0.0176   NR PIS03438.1 1973936 g70008 i0 51.3 2.6890243902439 39 19 71.3 0 1 117 109 147 PIS03438.1 MAG: 7-dehydrocholesterol reductase [Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34] diamond 441 42.4 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium CG10_big_fil_rev_8_21_14_0_10_42_34
31212935 31212935 PRJNA438111_P_NODE_48855_length_183_cov_1.844156_g48230_i0 PRJNA438111 48855 183 1.844156 3.37480548 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 41.2 0.0123   NR QLH35129.1 2052176 g48230 i0 41.1 0.918032786885246 56 32 91.8 1 16 183 13 67 QLH35129.1 MAG: hypothetical protein HWD61_02415 [Parachlamydiaceae bacterium] diamond 168 41.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31403346 31403346 PRJNA438111_P_NODE_76616_length_160_cov_4.167939_g75991_i0 PRJNA438111 76616 160 4.167939 6.6687024 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 61.6 2.62e-9   NR MFV0339851.1 2052176 g75991 i0 45.3 0.99375 53 29 99.4 0 159 1 198 250 MFV0339851.1 WecB/TagA/CpsF family glycosyltransferase [Parachlamydiaceae bacterium] diamond 159 61.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31672483 31672483 PRJNA438111_P_NODE_51017_length_180_cov_4.556291_g50392_i0 PRJNA438111 51017 180 4.556291 8.2013238 PVC group 1783257 Bacteria Bacteria 79.3 2.04e-15   NR MFI5343611.1 2047757 g50392 i0 63.3 3.01666666666667 60 22 100 0 180 1 94 153 MFI5343611.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase [Chlamydiales bacterium] diamond 543 80.1 0.990012484394507 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32004261 32004261 PRJNA438111_P_NODE_71198_length_164_cov_1.051852_g70573_i0 PRJNA438111 71198 164 1.051852 1.72503728 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 73.6 1.72e-13   NR MEI8365956.1 2052176 g70573 i0 66.7 0.932926829268293 51 17 93.3 0 2 154 575 625 MEI8365956.1 1-deoxy-D-xylulose-5-phosphate synthase [Parachlamydiaceae bacterium] diamond 153 73.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32447384 32447384 PRJNA438111_P_NODE_55639_length_176_cov_1.142857_g55014_i0 PRJNA438111 55639 176 1.142857 2.01142832 Chlamydiia bacterium 2052156 Bacteria Bacteria 70.9 7.4e-13   NR MCB1149078.1 2052156 g55014 i0 54.4 0.971590909090909 57 26 97.2 0 6 176 104 160 MCB1149078.1 deoxyribonuclease IV [Chlamydiia bacterium] diamond 171 70.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
32542336 32542336 PRJNA438111_P_NODE_79319_length_158_cov_3.930233_g78694_i0 PRJNA438111 79319 158 3.930233 6.20976814 Criblamydia sequanensis 340071 Bacteria Bacteria 87.8 1.19e-18   NR WP_041017890.1 340071 g78694 i0 75 0.987341772151899 52 13 98.7 0 158 3 132 183 WP_041017890.1 nucleotide sugar dehydrogenase [Criblamydia sequanensis] diamond 156 87.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
32668020 32668020 PRJNA438111_P_NODE_29700_length_210_cov_4.502762_g29075_i0 PRJNA438111 29700 210 4.502762 9.4558002 Chlamydiales bacterium 2047757 Bacteria Bacteria 51.6 1.29e-5   NR MBI2743370.1 2047757 g29075 i0 71.9 1.81428571428571 32 9 45.7 0 208 113 124 155 MBI2743370.1 SAM-dependent methyltransferase [Chlamydiales bacterium] diamond 381 51.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32731200 32731200 PRJNA438111_P_NODE_57940_length_173_cov_3.729167_g57315_i0 PRJNA438111 57940 173 3.729167 6.45145891 Chlamydiota bacterium 2081524 Bacteria Bacteria 82 2.71e-17   NR MES2345244.1 2081524 g57315 i0 61.4 0.988439306358382 57 22 98.8 0 172 2 170 226 MES2345244.1 2OG-Fe(II) oxygenase [Chlamydiota bacterium] diamond 171 82 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;