RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA438111", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 5 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 5 ✖

bioproject 1

  • PRJNA438111 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15737262 15737262 PRJNA438111_P_NODE_74513_length_161_cov_7.189394_g73888_i0 PRJNA438111 74513 161 7.189394 11.57492434 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 68.6 9.28e-12   NR MBU1864323.1 2035772 g73888 i0 78.6 0.782608695652174 42 9 78.3 0 34 159 11 52 MBU1864323.1 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Omnitrophota bacterium] diamond 126 68.6 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
25317027 25317027 PRJNA438111_P_NODE_82080_length_156_cov_3.354331_g81455_i0 PRJNA438111 82080 156 3.354331 5.23275636 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 86.3 9.38e-19   NR HRY86190.1 2035772 g81455 i0 74.5 1.96153846153846 51 13 98.1 0 2 154 145 195 HRY86190.1 MBL fold metallo-hydrolase [Candidatus Omnitrophota bacterium] diamond 306 86.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28939299 28939299 PRJNA438111_P_NODE_83028_length_155_cov_5.246032_g82403_i0 PRJNA438111 83028 155 5.246032 8.1313496 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 78.2 3.57e-15   NR HAM40605.1 2035772 g82403 i0 70.2 0.909677419354839 47 14 91 0 15 155 46 92 HAM40605.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 141 78.2 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30012893 30012893 PRJNA438111_P_NODE_48031_length_184_cov_1.812903_g47406_i0 PRJNA438111 48031 184 1.812903 3.33574152 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 85.9 1.04e-17   NR MFH1208801.1 2035772 g47406 i0 68.3 0.978260869565217 60 19 97.8 0 3 182 244 303 MFH1208801.1 PD-(D/E)XK nuclease family protein [Candidatus Omnitrophota bacterium] diamond 180 85.9 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30265778 30265778 PRJNA438111_P_NODE_17552_length_253_cov_3.857143_g16927_i0 PRJNA438111 17552 253 3.857143 9.75857179 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47 0.00128   NR MFH1441683.1 2035772 g16927 i0 46.2 3.54545454545455 52 28 61.7 0 161 6 329 380 MFH1441683.1 hexokinase [Candidatus Omnitrophota bacterium] diamond 897 47 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;