RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA438111", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA438111 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4261395 4261395 PRJNA438111_P_NODE_56924_length_174_cov_3.779310_g56299_i0 PRJNA438111 56924 174 3.77931 6.5759994 Methanothermobacter sp. MT-2 1898379 Archaea Archaea 52.8 0.015   NTclustered gi|1111744065|dbj|AP017647.1| 1898379 g56299 i0 96.774 0.17816091954023 31 1 18 0 126 156 1506290 1506320 Methanothermobacter sp. MT-2 DNA, complete genome blastn 31 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter sp. MT-2
10638644 10638644 PRJNA438111_P_NODE_84469_length_154_cov_4.960000_g83844_i0 PRJNA438111 84469 154 4.96 7.6384 Methanococcus maripaludis 39152 Archaea Archaea 54.7 0.004   NTclustered gi|1342459100|gb|CP026606.1| 39152 g83844 i0 96.97 0.214285714285714 33 0 21 1 25 57 551317 551286 Methanococcus maripaludis strain DSM 2067 chromosome, complete genome blastn 33 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;