RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA438111", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA438111 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4918581 4918581 PRJNA438111_P_NODE_1764_length_719_cov_22.123188_g1385_i0 PRJNA438111 1764 719 22.123188 159.06572172 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 174 1.77e-51   NR ABD72565.1 5778 g1385 i0 64.6 0.542420027816412 130 46 54.2 0 620 231 1 130 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 390 174 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27360559 27360559 PRJNA438111_P_NODE_1223_length_852_cov_24.267315_g924_i0 PRJNA438111 1223 852 24.267315 206.7575238 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 263 2.22e-84   NR AAY21191.1 5778 g924 i0 58.6 0.834507042253521 237 94 83.5 1 107 817 12 244 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 711 263 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29128793 29128793 PRJNA438111_P_NODE_1389_length_799_cov_29.692208_g1064_i0 PRJNA438111 1389 799 29.692208 237.24074192 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 262 2.32e-84   NR AAY21191.1 5778 g1064 i0 59.1 0.882352941176471 235 92 88.2 1 60 764 14 244 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 705 262 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29286307 29286307 PRJNA438111_P_NODE_1529_length_766_cov_10.876526_g1178_i0 PRJNA438111 1529 766 10.876526 83.31418916 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 188 7.589999999999999e-57   NR ABD72565.1 5778 g1178 i0 66.4 0.536553524804178 137 46 53.7 0 100 510 1 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 411 188 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29854838 29854838 PRJNA438111_P_NODE_11171_length_307_cov_4.327338_g10548_i0 PRJNA438111 11171 307 4.327338 13.28492766 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 144 6.2e-41   NR ABD46563.1 5778 g10548 i0 64.4 2.98045602605863 101 35 98.7 1 1 303 68 167 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 915 144 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31071894 31071894 PRJNA438111_P_NODE_46175_length_186_cov_2.713376_g45550_i0 PRJNA438111 46175 186 2.713376 5.04687936 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72.8 4.36e-13   NR ABD62815.1 5778 g45550 i0 61.3 11.5645161290323 62 21 95.2 1 185 9 767 828 ABD62815.1 mitochondrial single-subunit RNA polymerase [Vermamoeba vermiformis] diamond 2151 73.2 0.994535519125683 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32067346 32067346 PRJNA438111_P_NODE_55538_length_176_cov_1.782313_g54913_i0 PRJNA438111 55538 176 1.782313 3.13687088 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 76.3 1.75e-14   NR ABD46559.1 5778 g54913 i0 56 0.852272727272727 50 22 85.2 0 151 2 83 132 ABD46559.1 glycosyl hydrolase family 15-like protein, partial [Vermamoeba vermiformis] diamond 150 76.3 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;