RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA437204", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA437204 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26997192 26997192 PRJNA437204_P_NODE_89722_length_249_cov_0.875000_g89423_i0 PRJNA437204 89722 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 45.1 0.0047   NR MDR1993242.1 2026795 g89423 i0 64.3 0.686746987951807 28 10 33.7 0 127 44 6 33 MDR1993242.1 hypothetical protein [Nitrososphaerota archaeon] diamond 171 45.1 1 Archaea   Thermoproteati Nitrososphaerota         Nitrososphaerota archaeon
30202003 30202003 PRJNA437204_P_NODE_11612_length_507_cov_1.145161_g11314_i0 PRJNA437204 11612 507 1.145161 5.80596627 Nitrososphaera sp. 1971748 Archaea Archaea 58.9 8.27e-7   NR MEP0826844.1 1971748 g11314 i0 42.5 0.863905325443787 73 36 39.6 1 239 39 56 128 MEP0826844.1 cupredoxin domain-containing protein [Nitrososphaera sp.] diamond 438 58.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae Nitrososphaera Nitrososphaera sp.
30771154 30771154 PRJNA437204_P_NODE_128534_length_241_cov_0.916667_g128235_i0 PRJNA437204 128534 241 0.916667 2.20916747 Nitrososphaeria archaeon 2268198 Archaea Archaea 73.9 3.71e-13   NR MEM3404057.1 2268198 g128235 i0 45.6 0.983402489626556 79 38 98.3 1 1 237 485 558 MEM3404057.1 ATP-dependent DNA ligase [Nitrososphaeria archaeon] diamond 237 73.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria       Nitrososphaeria archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;