RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA437204" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA437204 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5537308 5537308 PRJNA437204_P_NODE_93845_length_248_cov_0.880000_g93546_i0 PRJNA437204 93845 248 0.88 2.1824 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 164 9.73e-48   NR MCD5380866.1 2044595 g93546 i0 98.8 13.8870967741935 82 1 99.2 0 248 3 146 227 MCD5380866.1 sigma-70 family RNA polymerase sigma factor [Candidatus Altimarinota bacterium] diamond 3444 164 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29886486 29886486 PRJNA437204_P_NODE_19051_length_419_cov_1.985549_g18752_i0 PRJNA437204 19051 419 1.985549 8.31945031 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 82 2.73e-15   NR MDD4151141.1 2044595 g18752 i0 42.5 0.809069212410501 113 53 73 3 30 335 1 112 MDD4151141.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 339 82 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31308095 31308095 PRJNA437204_P_NODE_26095_length_374_cov_1.279070_g25796_i0 PRJNA437204 26095 374 1.27907 4.7837218 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 45.8 0.0117   NR MDD4151141.1 2044595 g25796 i0 41.1 0.842245989304813 56 33 44.9 0 179 346 171 226 MDD4151141.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 315 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
31972457 31972457 PRJNA437204_P_NODE_97498_length_247_cov_1.304598_g97199_i0 PRJNA437204 97498 247 1.304598 3.22235706 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 59.7 2.49e-9   NR MDD5770515.1 2044595 g97199 i0 41.1 0.88663967611336 73 42 87.4 1 216 1 19 91 MDD5770515.1 hypothetical protein [Candidatus Altimarinota bacterium] diamond 219 59.7 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;