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contig_metadata

15 rows where bioproject = "PRJNA437204", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 15 ✖

tax_kingdom 1

  • Pseudomonadati · 15 ✖

bioproject 1

  • PRJNA437204 · 15 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8085173 8085173 PRJNA437204_P_NODE_123747_length_242_cov_0.911243_g123448_i0 PRJNA437204 123747 242 0.911243 2.20520806 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 54.7 0.006   NTclustered gi|578016248|gb|CP002190.1| 765869 g123448 i0 92.308 0.557851239669422 39 1 16 2 4 41 2960384 2960421 Bdellovibrio bacteriovorus W, complete genome blastn 135 54.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
8742763 8742763 PRJNA437204_P_NODE_42847_length_317_cov_1.262295_g42548_i0 PRJNA437204 42847 317 1.262295 4.00147515 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 107 4.410000000000001e-27   NR MBP9675022.1 2081706 g42548 i0 80.3 3.95583596214511 66 13 62.5 0 35 232 61 126 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 1254 107 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
11912403 11912403 PRJNA437204_P_NODE_96510_length_248_cov_0.880000_g96211_i0 PRJNA437204 96510 248 0.88 2.1824 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 95.5 8.489999999999999e-23   NR MES2615336.1 3034175 g96211 i0 90.6 1.27016129032258 53 5 64.1 0 6 164 105 157 MES2615336.1 30S ribosomal protein S7 [Bdellovibrionota bacterium] diamond 315 95.5 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
26695916 26695916 PRJNA437204_P_NODE_110881_length_244_cov_1.801170_g110582_i0 PRJNA437204 110881 244 1.80117 4.3948548 Oligoflexus sp. 1971216 Bacteria Bacteria 70.1 2.02e-12   NR WP_324950130.1 1971216 g110582 i0 59.3 0.725409836065574 59 22 71.3 2 70 243 47 104 WP_324950130.1 peptidylprolyl isomerase [Oligoflexus sp.] diamond 177 70.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
27771052 27771052 PRJNA437204_P_NODE_124144_length_242_cov_0.911243_g123845_i0 PRJNA437204 124144 242 0.911243 2.20520806 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 118 2.76e-29   NR MES2613796.1 3034175 g123845 i0 72.4 0.942148760330578 76 21 94.2 0 237 10 17 92 MES2613796.1 MFS transporter [Bdellovibrionota bacterium] diamond 228 118 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
27771054 27771054 PRJNA437204_P_NODE_125644_length_241_cov_0.916667_g125345_i0 PRJNA437204 125644 241 0.916667 2.20916747 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 45.4 0.00311   NR MDH5581725.1 2053517 g125345 i0 33.3 0.933609958506224 75 49 93.4 1 241 17 97 170 MDH5581725.1 START domain-containing protein [Bdellovibrionales bacterium] diamond 225 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28197566 28197566 PRJNA437204_P_NODE_80946_length_251_cov_0.865169_g80647_i0 PRJNA437204 80946 251 0.865169 2.17157419 Pseudomonadati 3379134 Bacteria Bacteria 158 2.1699999999999998e-47   NR HLW57606.1 2081706 g80647 i0 100 2.97609561752988 83 0 99.2 0 2 250 39 121 HLW57606.1 type II secretion system F family protein [Bacteriovoracaceae bacterium] diamond 747 158 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
28749674 28749674 PRJNA437204_P_NODE_86067_length_250_cov_0.870056_g85768_i0 PRJNA437204 86067 250 0.870056 2.17514 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 73.2 6.22e-13   NR HLW55810.1 2081706 g85768 i0 85 0.48 40 6 48 0 3 122 338 377 HLW55810.1 type IV pilus twitching motility protein PilT [Bacteriovoracaceae bacterium] diamond 120 73.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29791403 29791403 PRJNA437204_P_NODE_17631_length_432_cov_1.587744_g17332_i0 PRJNA437204 17631 432 1.587744 6.85905408 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 166 1.76e-49   NR MBP9675022.1 2081706 g17332 i0 83.8 0.6875 99 16 68.8 0 17 313 13 111 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 297 166 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29822924 29822924 PRJNA437204_P_NODE_25871_length_375_cov_1.274834_g25572_i0 PRJNA437204 25871 375 1.274834 4.7806275 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 135 8.3e-35   NR MCB0370360.1 2053517 g25572 i0 58.2 0.976 122 44 94.4 3 2 355 190 308 MCB0370360.1 HAD-IC family P-type ATPase [Bdellovibrionales bacterium] diamond 366 135 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
29949563 29949563 PRJNA437204_P_NODE_20971_length_404_cov_1.858006_g20672_i0 PRJNA437204 20971 404 1.858006 7.50634424 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 164 1.1799999999999999e-48   NR MCB0368045.1 2053517 g20672 i0 66.4 2.71782178217822 122 41 90.6 0 404 39 55 176 MCB0368045.1 EF-hand domain-containing protein [Bdellovibrionales bacterium] diamond 1098 164 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
31909193 31909193 PRJNA437204_P_NODE_123097_length_242_cov_0.911243_g122798_i0 PRJNA437204 123097 242 0.911243 2.20520806 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 106 6.62e-27   NR MBP9675022.1 2081706 g122798 i0 84.1 0.78099173553719 63 10 78.1 0 28 216 20 82 MBP9675022.1 EF-hand domain-containing protein [Bacteriovoracaceae bacterium] diamond 189 106 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
31972419 31972419 PRJNA437204_P_NODE_106638_length_245_cov_0.982558_g106339_i0 PRJNA437204 106638 245 0.982558 2.4072671 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 65.5 3.59e-10   NR MCB0371130.1 2053517 g106339 i0 40.7 0.991836734693878 81 47 99.2 1 2 244 336 415 MCB0371130.1 ATP-grasp domain-containing protein [Bdellovibrionales bacterium] diamond 243 65.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32225719 32225719 PRJNA437204_P_NODE_121478_length_242_cov_0.911243_g121179_i0 PRJNA437204 121478 242 0.911243 2.20520806 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 60.1 2.45e-8   NR MBX9702590.1 2654442 g121179 i0 40.9 0.818181818181818 66 33 74.4 1 237 58 259 324 MBX9702590.1 serine/threonine-protein kinase [Silvanigrellaceae bacterium] diamond 198 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
32415594 32415594 PRJNA437204_P_NODE_91439_length_249_cov_0.875000_g91140_i0 PRJNA437204 91439 249 0.875 2.17875 Peredibacter starrii 28202 Bacteria Bacteria 113 6.640000000000001e-27   NR WP_321396741.1 28202 g91140 i0 68.3 1.86746987951807 82 25 98.8 1 248 3 1037 1117 WP_321396741.1 FHA domain-containing protein [Peredibacter starrii] diamond 465 113 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;