RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA437204", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA437204 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6809465 6809465 PRJNA437204_P_NODE_115086_length_244_cov_0.900585_g114787_i0 PRJNA437204 115086 244 0.900585 2.1974274 Victivallales bacterium 2212475 Bacteria Bacteria 162 1.69e-45   NR MBR4222374.1 2212475 g114787 i0 98.8 0.983606557377049 80 1 98.4 0 3 242 236 315 MBR4222374.1 threonine--tRNA ligase [Victivallales bacterium] diamond 240 162 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
28244273 28244273 PRJNA437204_P_NODE_35506_length_337_cov_1.537879_g35207_i0 PRJNA437204 35506 337 1.537879 5.18265223 Lentisphaeria bacterium 2053569 Bacteria Bacteria 92.4 1.27e-20   NR MBR2509768.1 2053569 g35207 i0 48.9 0.783382789317507 88 45 78.3 0 327 64 76 163 MBR2509768.1 redoxin family protein [Lentisphaeria bacterium] diamond 264 92.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;