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contig_metadata

23 rows where bioproject = "PRJNA437204" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 23 ✖

bioproject 1

  • PRJNA437204 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1708061 1708061 PRJNA437204_P_NODE_69662_length_265_cov_1.947917_g69363_i0 PRJNA437204 69662 265 1.947917 5.16198005 Methanobrevibacter ruminantium 83816 Archaea Archaea 344 3.57e-90   NTclustered gi|288541968|gb|CP001719.1| 634498 g69363 i0 90.262 8.86792452830189 267 20 99 4 1 264 2614529 2614266 Methanobrevibacter ruminantium M1, complete genome blastn 2350 344 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
3640406 3640406 PRJNA437204_P_NODE_117843_length_243_cov_0.905882_g117544_i0 PRJNA437204 117843 243 0.905882 2.20129326 Methanobacteriaceae 2159 Archaea Archaea 76.8 1.3e-9   NTclustered gi|952971377|emb|LN734822.1| 2162 g117544 i0 97.727 20.4567901234568 44 1 18 0 197 240 728374 728417 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 4971 76.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum
7468131 7468131 PRJNA437204_P_NODE_71266_length_263_cov_1.310526_g70967_i0 PRJNA437204 71266 263 1.310526 3.44668338 Methanobrevibacter 2172 Archaea Archaea 481 2.58e-131   NTclustered gi|1294447101|gb|CP017803.1| 2173 g70967 i0 99.62 144.201520912548 263 1 100 0 1 263 265248 264986 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 37925 481 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
9359808 9359808 PRJNA437204_P_NODE_112708_length_244_cov_0.900585_g112409_i0 PRJNA437204 112708 244 0.900585 2.1974274 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 351 1.9399999999999998e-92   NTclustered gi|985614202|gb|CP010834.1| 1609968 g112409 i0 92.623 2.90163934426229 244 18 100 0 1 244 218749 218506 Methanobrevibacter sp. YE315, complete genome blastn 708 351 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
9360109 9360109 PRJNA437204_P_NODE_129568_length_234_cov_4.726708_g129269_i0 PRJNA437204 129568 234 4.726708 11.06049672 Methanobrevibacter sp. YE315 1609968 Archaea Archaea 340 3.989999999999999e-89   NTclustered gi|985614202|gb|CP010834.1| 1609968 g129269 i0 92.797 12.4957264957265 236 15 100 2 1 234 1671767 1671532 Methanobrevibacter sp. YE315, complete genome blastn 2924 340 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. YE315
10017912 10017912 PRJNA437204_P_NODE_37748_length_330_cov_4.688716_g37449_i0 PRJNA437204 37748 330 4.688716 15.4727628 Methanobrevibacter 2172 Archaea Archaea 601 2.46e-167   NTclustered gi|5725308|emb|AJ009959.1| 66852 g37449 i0 100 105.075757575758 325 0 98 0 6 330 1 325 Methanobrevibacter sp. NT7, 16S rRNA gene, partial blastn 34675 604 0.995033112582781 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
10636186 10636186 PRJNA437204_P_NODE_26809_length_370_cov_2.838384_g26510_i0 PRJNA437204 26809 370 2.838384 10.5020208 Methanosphaera sp. BMS 1789762 Archaea Archaea 667 0   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g26510 i0 99.191 45.8135135135135 371 2 100 1 1 370 2067180 2066810 Methanosphaera sp. BMS chromosome, complete genome blastn 16951 667 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
10636717 10636717 PRJNA437204_P_NODE_52769_length_294_cov_2.484163_g52470_i0 PRJNA437204 52769 294 2.484163 7.30343922 Methanosphaera sp. BMS 1789762 Archaea Archaea 499 8.099999999999998e-137   NTclustered gi|1409374143|gb|CP014213.1| 1789762 g52470 i0 97.279 11.7517006802721 294 8 100 0 1 294 1090855 1090562 Methanosphaera sp. BMS chromosome, complete genome blastn 3455 499 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. BMS
12569026 12569026 PRJNA437204_P_NODE_7770_length_595_cov_1.429119_g7475_i0 PRJNA437204 7770 595 1.429119 8.50325805 Methanobrevibacter 2172 Archaea Archaea 1066 0   NTclustered gi|1651227316|emb|LR590664.1| 2173 g7475 i0 98.992 105.678991596639 595 6 100 0 1 595 11 605 Methanobrevibacter smithii partial 16S rRNA gene, strain C2 CSUR P5816 blastn 62879 1066 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
18283540 18283540 PRJNA437204_P_NODE_123635_length_242_cov_0.911243_g123336_i0 PRJNA437204 123635 242 0.911243 2.20520806 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 156 2.8199999999999994e-42   NR WP_295614768.1 253161 g123336 i0 91.3 0.991735537190083 80 7 99.2 0 242 3 139 218 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 240 156 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
19558698 19558698 PRJNA437204_P_NODE_52276_length_295_cov_15.873874_g51977_i0 PRJNA437204 52276 295 15.873874 46.8279283 Methanobrevibacter olleyae 294671 Archaea Archaea 401 2.3599999999999993e-107   NTclustered gi|998157363|gb|CP014265.1| 294671 g51977 i0 91.186 6.34237288135593 295 26 100 0 1 295 497420 497714 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 1871 401 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
22109392 22109392 PRJNA437204_P_NODE_51338_length_297_cov_21.754464_g51039_i0 PRJNA437204 51338 297 21.754464 64.61075808 Methanobrevibacter ruminantium 83816 Archaea Archaea 333 8.8e-87   NTclustered gi|288541968|gb|CP001719.1| 634498 g51039 i0 86.869 3.57575757575758 297 39 100 0 1 297 1064333 1064629 Methanobrevibacter ruminantium M1, complete genome blastn 1062 333 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter ruminantium
24658123 24658123 PRJNA437204_P_NODE_118600_length_243_cov_0.905882_g118301_i0 PRJNA437204 118600 243 0.905882 2.20129326 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 155 7.56e-42   NR WP_295614768.1 253161 g118301 i0 96.3 1 81 3 100 0 243 1 7 87 WP_295614768.1 GTP-binding protein [uncultured Methanobrevibacter sp.] diamond 243 155 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
27123563 27123563 PRJNA437204_P_NODE_124082_length_242_cov_0.911243_g123783_i0 PRJNA437204 124082 242 0.911243 2.20520806 Methanobrevibacter 2172 Archaea Archaea 144 3.929999999999999e-40   NR WP_069575356.1 2172 g123783 i0 87.5 1.98347107438017 80 10 99.2 0 3 242 8 87 WP_069575356.1 MULTISPECIES: beta-ribofuranosylaminobenzene 5'-phosphate synthase [Methanobrevibacter] diamond 480 144 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter  
27455291 27455291 PRJNA437204_P_NODE_127383_length_241_cov_0.916667_g127084_i0 PRJNA437204 127383 241 0.916667 2.20916747 unclassified Methanobrevibacter 2638681 Archaea Archaea 148 2.36e-41   NR WP_305514040.1 2638681 g127084 i0 91.3 1.99170124481328 80 7 99.6 0 241 2 57 136 WP_305514040.1 MULTISPECIES: nicotinate mononucleotide-dependent phosphoribosyltransferase CobT [unclassified Methanobrevibacter] diamond 480 148 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter  
28181081 28181081 PRJNA437204_P_NODE_88586_length_249_cov_1.181818_g88287_i0 PRJNA437204 88586 249 1.181818 2.94272682 Methanobrevibacter sp. 66852 Archaea Archaea 42.4 0.00798   NR MBO7695000.1 66852 g88287 i0 53.3 0.542168674698795 45 19 51.8 1 144 16 4 48 MBO7695000.1 hypothetical protein [Methanobrevibacter sp.] diamond 135 42.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30265724 30265724 PRJNA437204_P_NODE_112812_length_244_cov_0.900585_g112513_i0 PRJNA437204 112812 244 0.900585 2.1974274 Methanobrevibacter sp. 66852 Archaea Archaea 142 3.039999999999999e-38   NR WP_292786634.1 66852 g112513 i0 88.8 1.9672131147541 80 9 98.4 0 242 3 8 87 WP_292786634.1 TrkH family potassium uptake protein [Methanobrevibacter sp.] diamond 480 142 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
30834168 30834168 PRJNA437204_P_NODE_105334_length_246_cov_0.890173_g105035_i0 PRJNA437204 105334 246 0.890173 2.18982558 Methanobrevibacter sp. 66852 Archaea Archaea 111 3.5800000000000003e-29   NR WP_405268717.1 66852 g105035 i0 65.9 2.82926829268293 85 24 98.8 2 245 3 1 84 WP_405268717.1 hypothetical protein [Methanobrevibacter sp.] diamond 696 111 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31023793 31023793 PRJNA437204_P_NODE_55035_length_290_cov_1.202765_g54736_i0 PRJNA437204 55035 290 1.202765 3.4880185 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 175 1.3e-52   NR WP_296788087.1 253161 g54736 i0 93.2 0.910344827586207 88 6 91 0 264 1 1 88 WP_296788087.1 class II glutamine amidotransferase [uncultured Methanobrevibacter sp.] diamond 264 175 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
31023810 31023810 PRJNA437204_P_NODE_92195_length_249_cov_0.875000_g91896_i0 PRJNA437204 92195 249 0.875 2.17875 Methanobrevibacter thaueri 190975 Archaea Archaea 149 6.11e-42   NR WP_116591199.1 190975 g91896 i0 92.3 0.939759036144578 78 6 94 0 1 234 159 236 WP_116591199.1 NAD-dependent epimerase/dehydratase family protein [Methanobrevibacter thaueri] diamond 234 149 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter thaueri
31149715 31149715 PRJNA437204_P_NODE_84355_length_250_cov_0.870056_g84056_i0 PRJNA437204 84355 250 0.870056 2.17514 Methanobrevibacter sp. 66852 Archaea Archaea 108 3.87e-28   NR MBQ2653521.1 66852 g84056 i0 67.9 0.936 78 23 91.2 2 229 2 1 78 MBQ2653521.1 hypothetical protein [Methanobrevibacter sp.] diamond 234 108 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31750900 31750900 PRJNA437204_P_NODE_51757_length_297_cov_1.031250_g51458_i0 PRJNA437204 51757 297 1.03125 3.0628125 Methanobrevibacter thaueri 190975 Archaea Archaea 198 1.35e-61   NR WP_303723960.1 190975 g51458 i0 97.8 13.8383838383838 92 2 92.9 0 276 1 1 92 WP_303723960.1 class II glutamine amidotransferase [Methanobrevibacter thaueri] diamond 4110 198 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter thaueri
32605142 32605142 PRJNA437204_P_NODE_69280_length_266_cov_1.357513_g68981_i0 PRJNA437204 69280 266 1.357513 3.6109845800000002 Methanobacterium sp. SMA-27 1495336 Archaea Archaea 57.4 2.3e-7   NR WP_197050653.1 1495336 g68981 i0 50 0.586466165413534 52 26 58.6 0 111 266 1 52 WP_197050653.1 ABC transporter ATP-binding protein [Methanobacterium sp. SMA-27] diamond 156 57.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. SMA-27

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;