RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA437204", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA437204 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2983098 2983098 PRJNA437204_P_NODE_35143_length_338_cov_1.977358_g34844_i0 PRJNA437204 35143 338 1.977358 6.68347004 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 255 2.2700000000000002e-63   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g34844 i0 80.58 90.4023668639053 345 56 100 8 1 338 2531071 2530731 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 30556 255 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
17010168 17010168 PRJNA437204_P_NODE_59254_length_282_cov_1.473684_g58955_i0 PRJNA437204 59254 282 1.473684 4.15578888 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 377 3.78e-100   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g58955 i0 90.78 190.429078014184 282 26 100 0 1 282 2532144 2532425 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 53701 377 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
22108605 22108605 PRJNA437204_P_NODE_12638_length_490_cov_1.273381_g12340_i0 PRJNA437204 12638 490 1.273381 6.2395669 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 257 9.44e-64   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g12340 i0 77.704 82.630612244898 453 79 90 16 42 484 1770474 1770034 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 40489 257 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
28671402 28671402 PRJNA437204_P_NODE_119527_length_243_cov_0.905882_g119228_i0 PRJNA437204 119527 243 0.905882 2.20129326 FCB group 1783270 Bacteria Bacteria 72 1.61e-12   NR MBT8399201.1 2497633 g119228 i0 53.6 3.91358024691358 56 26 69.1 0 75 242 3 58 MBT8399201.1 RiPP maturation radical SAM C-methyltransferase [Rhodothermia bacterium] diamond 951 72.4 0.994475138121547 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia       Rhodothermia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;