RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA437204", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Saccharimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA437204 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5535439 5535439 PRJNA437204_P_NODE_112005_length_244_cov_0.900585_g111706_i0 PRJNA437204 112005 244 0.900585 2.1974274 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 401 1.8999999999999998e-107   NTclustered gi|1474570736|gb|CP023991.1| 2026720 g111706 i0 96.311 90.8811475409836 244 9 100 0 1 244 887180 886937 Candidatus Saccharibacteria bacterium isolate CG19_WC_8_21_14_NA_150_51_44 chromosome, complete genome blastn 22175 401 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28875916 28875916 PRJNA437204_P_NODE_65968_length_271_cov_1.494949_g65669_i0 PRJNA437204 65968 271 1.494949 4.05131179 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 65.9 3.97e-10   NR HVX57191.1 2973664 g65669 i0 37.6 0.940959409594096 85 53 94.1 0 8 262 501 585 HVX57191.1 reverse transcriptase domain-containing protein [Candidatus Saccharimonadales bacterium] diamond 255 65.9 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
31023767 31023767 PRJNA437204_P_NODE_119515_length_243_cov_0.905882_g119216_i0 PRJNA437204 119515 243 0.905882 2.20129326 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 96.3 4.980000000000001e-21   NR MBP6961952.1 2026720 g119216 i0 81.8 2.12345679012346 55 10 67.9 0 69 233 4 58 MBP6961952.1 SAM-dependent DNA methyltransferase [Candidatus Saccharibacteria bacterium] diamond 516 96.3 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;