RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA437204", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Buchananiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Buchananiibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA437204 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27518264 27518264 PRJNA437204_P_NODE_123243_length_242_cov_0.911243_g122944_i0 PRJNA437204 123243 242 0.911243 2.20520806 Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_ 2268182 Bacteria Bacteria 43.5 0.0195   NR OGY43936.1 1797532 g122944 i0 28.8 0.818181818181818 66 45 81.8 1 225 28 299 362 OGY43936.1 MAG: arginine--tRNA ligase [Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_01_FULL_39_14] diamond 198 43.5 1 Bacteria Bacteria candidate phyla   Candidatus Buchananiibacteriota         Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_01_FULL_39_14

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;