RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA436017" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA436017 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11909752 11909752 PRJNA436017_P_NODE_530_length_1187_cov_9.006957_g432_i0 PRJNA436017 530 1187 9.006957 106.91257959000001 Pseudomonadati 3379134 Bacteria Bacteria 240 8.31e-75   NR NOX85821.1 2268192 g432 i0 66.7 0.871946082561078 174 55 44 2 1088 567 9 179 NOX85821.1 glutathione peroxidase [Chlorobiota bacterium] diamond 1035 242 0.991735537190083 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
29034006 29034006 PRJNA436017_P_NODE_11188_length_256_cov_1.068493_g10890_i0 PRJNA436017 11188 256 1.068493 2.73534208 Chlorobiota bacterium 2268192 Bacteria Bacteria 54.3 3.53e-6   NR NOZ48276.1 2268192 g10890 i0 37.6 1.875 85 46 97.3 3 254 6 74 153 NOZ48276.1 DUF3843 family protein [Chlorobiota bacterium] diamond 480 54.3 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
29618158 29618158 PRJNA436017_P_NODE_29170_length_151_cov_1.368421_g28872_i0 PRJNA436017 29170 151 1.368421 2.06631571 Pseudomonadati 3379134 Bacteria Bacteria 82 1.03e-16   NR NOY97406.1 2268192 g28872 i0 85.1 3.75496688741722 47 7 93.4 0 9 149 120 166 NOY97406.1 molecular chaperone DnaJ [Chlorobiota bacterium] diamond 567 82.4 0.995145631067961 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;