RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA436017", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA436017 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24657143 24657143 PRJNA436017_P_NODE_23640_length_168_cov_1.160305_g23342_i0 PRJNA436017 23640 168 1.160305 1.9493124 Metazoa 33208 Echinodermata other_Eukaryota 102 4.21e-25   NR XP_022093396.1 133434 g23342 i0 83.6 31.4285714285714 55 8 98.2 1 165 1 163 216 XP_022093396.1 60S ribosomal protein L8 [Acanthaster planci] diamond 5280 102 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Acanthasteridae Acanthaster Acanthaster planci
30503065 30503065 PRJNA436017_P_NODE_24553_length_165_cov_0.914062_g24255_i0 PRJNA436017 24553 165 0.914062 1.5082023 Metazoa 33208 Echinodermata other_Eukaryota 59.3 1.89e-8   NR XP_038054234.1 46514 g24255 i0 50.9 2.81818181818182 55 27 100 0 165 1 369 423 XP_038054234.1 protein DD3-3-like [Patiria miniata] diamond 465 59.3 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
32667941 32667941 PRJNA436017_P_NODE_23400_length_169_cov_0.863636_g23102_i0 PRJNA436017 23400 169 0.863636 1.45954484 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 42.7 0.0142   NR XP_041467999.1 7654 g23102 i0 40.7 0.958579881656805 54 31 94.1 1 163 5 107 160 XP_041467999.1 uncharacterized protein LOC121418285 [Lytechinus variegatus] diamond 162 42.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;